View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_4 (Length: 763)

Name: NF15541_high_4
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_4
NF15541_high_4
[»] chr3 (4 HSPs)
chr3 (19-748)||(10319555-10320299)
chr3 (19-748)||(10336671-10337415)
chr3 (19-748)||(10299123-10299867)
chr3 (614-730)||(10338441-10338557)
[»] chr7 (8 HSPs)
chr7 (491-748)||(35632616-35632876)
chr7 (191-450)||(35632337-35632596)
chr7 (405-748)||(35629386-35629722)
chr7 (186-331)||(35629167-35629312)
chr7 (575-746)||(35635959-35636136)
chr7 (230-331)||(35635631-35635732)
chr7 (267-338)||(35634262-35634333)
chr7 (406-505)||(35635807-35635906)


Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 10320299 - 10319555
Alignment:
19 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttc---------------cgagggccct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||    
10320299 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttcagagccagaggagtccgagggccct 10320200  T
104 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
10320199 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccaaattg 10320100  T
204 tgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 303  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10320099 tgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 10320000  T
304 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10319999 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 10319900  T
404 ccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10319899 ccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 10319800  T
504 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaaga 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
10319799 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaaga 10319700  T
604 acaagttatagatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10319699 acaagttatagatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 10319600  T
704 taataaacttatcattatctgttaaaactctagtatgcatctctg 748  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
10319599 taataaactgatcattatctgttaaaactctagtatgcatctctg 10319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 10337415 - 10336671
Alignment:
19 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttc---------------cgagggccct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||| |    
10337415 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttcagagccagaggagtccgagggcctt 10337316  T
104 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
10337315 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccaaattg 10337216  T
204 tgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 303  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10337215 tgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 10337116  T
304 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10337115 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 10337016  T
404 ccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10337015 ccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 10336916  T
504 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaaga 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
10336915 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaaga 10336816  T
604 acaagttatagatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 703  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10336815 acaagttatagatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 10336716  T
704 taataaacttatcattatctgttaaaactctagtatgcatctctg 748  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
10336715 taataaactgatcattatctgttaaaactctagtatgcatctctg 10336671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 10299867 - 10299123
Alignment:
19 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttc---------------cgagggccct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||    
10299867 aggaaaaaccactgtttgagattctaccgattgctctgagcccgagaactctcgccctcaagggtttgagggttcagagccagaggagtccgagggccct 10299768  T
104 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| || |    
10299767 gagagctagatgcatgtgatgaacctgattcaaactggataatatccttcagactccgatgcctcaatgactgcagccttgaagtggttaatccaaattg 10299668  T
204 tgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 303  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10299667 tgcaaaatctgattgtacaggcatgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatc 10299568  T
304 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10299567 acacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagcta 10299468  T
404 ccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 503  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10299467 ccgctagagcggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaa 10299368  T
504 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaaga 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
10299367 ttgtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaaga 10299268  T
604 acaagttatagatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10299267 acaagttatagatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaata 10299168  T
704 taataaacttatcattatctgttaaaactctagtatgcatctctg 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
10299167 taataaacttatcattatctgttaaaactctagtatgcatctctg 10299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 614 - 730
Target Start/End: Complemental strand, 10338557 - 10338441
Alignment:
614 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 713  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||   | |||||||||||| |||||||||||| |||| |||||||||  ||||||    
10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaactt 10338458  T
714 atcattatctgttaaaa 730  Q
    || | | ||||||||||    
10338457 attactctctgttaaaa 10338441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 491 - 748
Target Start/End: Original strand, 35632616 - 35632876
Alignment:
491 gtaaagactcaaatt-gtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaa 589  Q
    ||||||||||||||| ||| || || |||||||||  ||| ||||||||||||||| ||| | ||| ||| |  ||||||| ||| |||||  || ||||    
35632616 gtaaagactcaaattcgtcatcgataaaaaaacac--agaattattttcattttcttaagactaaacaagcc--cgtgttttttcacaatacaaaaggaa 35632711  T
590 aaatcaagaaaagaacaagttatagata------tatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatccca 683  Q
    ||| |||||||||||||||| |||||||      ||||||||||||||| ||||||||||||||||||||||| ||||  | |||||||||||| |||||    
35632712 aaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactccca 35632811  T
684 aagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctg 748  Q
    ||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||  ||||||||    
35632812 aagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg 35632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 191 - 450
Target Start/End: Original strand, 35632337 - 35632596
Alignment:
191 ttaatccagatcgtgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaa 290  Q
    |||||||||| ||||||||||| ||| | | |||||||||| |||||| | |||||||||||||| ||||  || ||||| ||||| || ||||| ||||    
35632337 ttaatccagaccgtgcaaaatcagatggcagaggcgtgtcaaatgagcatatgtaggacaaattatgtacgcgccgcctcagaaacaactttttggccaa 35632436  T
291 gaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttcctt 390  Q
    |||||  ||||| |||||||||||||||||||||||||||| ||||| ||||| | |||||  |||||| ||||| || | | |||||||||| || |||    
35632437 gaacaaaacaatgacacttatatcatcatgaaaagacctcctgctcatattgtcgtgtcccagagcagcagcctggatgtccatataggtaacatttctt 35632536  T
391 cttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatc 450  Q
    || || |||||| | |||||||| | | ||||||||||||| |||| |||||||||||||    
35632537 ctgttggcagcttcagctagagcagaattcagaagcctttttgcaactccctgcaaaatc 35632596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 405 - 748
Target Start/End: Original strand, 35629386 - 35629722
Alignment:
405 cgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaata--attaaattaaaagcctgcaaatataactgtaaagactcaa 502  Q
    ||||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||  | ||||| ||||||| ||||| ||||| |||| |||||||    
35629386 cgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaa 35629485  T
503 att-gtcgtcaat-caaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaa 600  Q
    ||| ||| |  || |||||||||| || ||||||||||||||| ||||| | ||||                   ||| ||||| ||||||| |||||||    
35629486 attcgtctttgatgcaaaaaacacaaatacttattttcattttataaagactaaat-------------------caaaatgaaaggaaaaaccaagaaa 35629566  T
601 agaacaagttataga--------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatc 692  Q
    |||| |||| |||||        ||||||| ||||||||| ||||| ||||||||||||||| | |||| || |||||||||||||||||||||||||||    
35629567 agaaaaagtcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatc 35629666  T
693 agaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctg 748  Q
    |||||||||||||| |||||| ||| ||| |||||||||||||||| |||||||||    
35629667 agaagcaaatataagaaacttgtcactatatgttaaaactctagtacgcatctctg 35629722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 186 - 331
Target Start/End: Original strand, 35629167 - 35629312
Alignment:
186 agtggttaatccagatcgtgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 285  Q
    ||||||||||||||| ||||||||| | ||| ||  |||  |||||||||||| | |||||||||||||| |||| |||  |||| ||||||||||||||    
35629167 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtacgggcatcctcagaaacgacgttttg 35629266  T
286 tccaagaacaccacaatcacacttatatcatcatgaaaagacctcc 331  Q
    || |||||||| ||||||||||||||||||||||||||||||||||    
35629267 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcc 35629312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 575 - 746
Target Start/End: Original strand, 35635959 - 35636136
Alignment:
575 tcaatatgaatggaaaaatcaagaaaagaacaagttataga------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatt 668  Q
    |||| ||||| |||||||| |||||||||| |||| |||||      |||| ||||| |||||| | ||| ||||||||||||||| | |||| || |||    
35635959 tcaaaatgaaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatt 35636058  T
669 tgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctc 746  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||| |||||| | |||||||    
35636059 tgacaagaaatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctagaacgcatctc 35636136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 35635631 - 35635732
Alignment:
230 cagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacct 329  Q
    ||||||||| | |||||||||||||| |||  |||  |||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
35635631 cagatgagcttttgtaggacaaattatgtaggggcatcctcagaatcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaatacct 35635730  T
330 cc 331  Q
    ||    
35635731 cc 35635732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 35634262 - 35634333
Alignment:
267 cctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcac 338  Q
    |||| |||||||  ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||    
35634262 cctcagaaacgaatttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctgctcac 35634333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 505
Target Start/End: Original strand, 35635807 - 35635906
Alignment:
406 gctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 505  Q
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35635807 gctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaatt 35635906  T

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