View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_1 (Length: 1002)
Name: NF15541_low_1
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 942; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 942; E-Value: 0
Query Start/End: Original strand, 19 - 988
Target Start/End: Complemental strand, 34976676 - 34975707
Alignment:
| Q |
19 |
aatctgggtctcctcccactattcccccaaacgcagctcttcagtttgatgtggagttgctgtcttggacaagtgtcaaggacattaccaaggatggtgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976676 |
aatctgggtctcctcccactattcccccaaacgcagctcttcagtttgatgtggagttgctgtcttggacaagtgtcaaggacattaccaaggatggtgg |
34976577 |
T |
|
| Q |
119 |
aatattgaaaaacataataactgaaggagagaaatgggacaatcctaaggaccctgatgaagtattcggtacagaactgaacctattatcctctttgaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976576 |
aatattgaaaaacataataactgaaggagagaaatgggacaatcctaaggaccctgatgaagtattcggtacagaactgaacctattatcctctttgaga |
34976477 |
T |
|
| Q |
219 |
aaagagattcacctatatggtagtaacattgataattattatctcacactctatccacttctatcctttctgcagttaagtatgaagctcgtctcgaaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976476 |
aaagagattcacctatatggtagtaacattgataattattatctcacactttatccgcttctatcctttctgcagttaagtatgaagctcgtctcgaaga |
34976377 |
T |
|
| Q |
319 |
aggaacaatcgtttcaaaatctgatggggtcgagttcactgttgaagagggttagtctcatacttctttcaattttatctcgggtatattggttgtgttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976376 |
aggaacaatcgtttcaaaatctgatggggtcgagttcactgttgaagagggttagtctcatacttctttcaattttatctcgggtatattggttgtgttc |
34976277 |
T |
|
| Q |
419 |
tgattgcaggtaattgactatgatgaatatttctttgatacaggttttttctgtcctgctttggccaaggctgtgaaaacaatgaagaagggagaaaaag |
518 |
Q |
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| T |
34976276 |
cgattgcaggtaattgactatgatgaatatttctttgatacaggttttttctgtcctgctttggccaaggctgtgaaaacaatgaagaagggagagaaag |
34976177 |
T |
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| Q |
519 |
ttctcttgaatgttaagccagaatgtgagtcaaatttctgttatcattagaatcaagcaaatacatattttccttgtataagtttattgactttcttaaa |
618 |
Q |
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| T |
34976176 |
ttctcttgaatgttaagccagaatgtgagtcaaatttctgttatcattagaatcaagcaaatacatattttccttgtataagtttattgactttcttaaa |
34976077 |
T |
|
| Q |
619 |
tttcttagatgcatttggtgagagtggaaaaccttcatcaggaaatgatggtgccatacctccaaatgcttcacttcaaatagatctcgagttagtctca |
718 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976076 |
ttttttagatgcatttggtgagagtggaaaaccttcatcaggaaataatggtgccatacctccaaatgcttcacttcaaatagatctcgagttagtctca |
34975977 |
T |
|
| Q |
719 |
tggaagacggtatctgacattactaaggataggaaggtccttaagaagaccttgaaggaaggagagggatatgaacgaccaaatgatggagctgtggttc |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34975976 |
tggaagacggtatctgacattactaaggataggaaggtccttaagaagaccttgaaggaaggagagggatatgaacgaccaaatgatggagctgtggttc |
34975877 |
T |
|
| Q |
819 |
agggtatagttttgctgatatagactttttaaagtttttgtgctttctttgtttccttgtaattatatattggattgtagtattgaatagatgaattatt |
918 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34975876 |
agggtacagttttgctgatatagactttttaaagtttttgtgctttctttgtttccttgtaattatatattggattgtagtattgaatagatgaattatt |
34975777 |
T |
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| Q |
919 |
tccattgattcagtgaaacttaccggaaagctgcaagatgggactgtcttctttaagaaaggtcatgatg |
988 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34975776 |
tccattgattcagtgaaacttaccggaaagctgcaagatgggactgtcttctttaagaaaggtcatgatg |
34975707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 458 - 544
Target Start/End: Complemental strand, 3495974 - 3495888
Alignment:
| Q |
458 |
acaggttttttctgtcctgctttggccaaggctgtgaaaacaatgaagaagggagaaaaagttctcttgaatgttaagccagaatgt |
544 |
Q |
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||||||| ||| |||||||| ||| | |||||||| || || |||||||||||||| ||||| |||||| ||| |||||| ||||| |
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| T |
3495974 |
acaggttatttttgtcctgcattgccaaaggctgttaagactatgaagaagggagagaaagtgatcttgactgtgaagccacaatgt |
3495888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 3496393 - 3496312
Alignment:
| Q |
19 |
aatctgggtctcctcccactattcccccaaacgcagctcttcagtttgatgtggagttgctgtcttggacaagtgtcaagga |
100 |
Q |
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||||||| |||||||| |||||||| || || || |||| || |||||||| ||| ||||||||||||| ||||| ||||| |
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| T |
3496393 |
aatctggttctcctccaactattcctcctaatgctactctgcaatttgatgttgagctgctgtcttggactagtgtgaagga |
3496312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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