View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_10 (Length: 562)
Name: NF15541_low_10
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_10 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 313 - 562
Target Start/End: Original strand, 39557161 - 39557410
Alignment:
| Q |
313 |
ctcaacttcgttcaaataattcatcattaaatgagttcaaccacttgattgttactaaataaagttgtaatttaaattattctaaatgattcgttattaa |
412 |
Q |
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| T |
39557161 |
ctcaacttcgttcaaatgattcatcattaaatgagttcaaccacttgattgttactaaataaagttgtaatttaaattattctaaatgattcgttattaa |
39557260 |
T |
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| Q |
413 |
ctctaatagagaatatcaaacctttttcatttcctcgtttggagttttgcttctcgaattcgatcttcatatacaaagtttcaaatgatttggcaacaaa |
512 |
Q |
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| T |
39557261 |
ctctaatagagaatatcaaaccttcttcatttcctcttttggagttttgcttctcgaattcgatcttcatatacaaagtttcaaatgatttggcaacaac |
39557360 |
T |
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| Q |
513 |
cttatcaaaaagagaactacatctaggacaaagtgttaccccatccgccc |
562 |
Q |
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| T |
39557361 |
cttatcaaaaagagaactacatccaggacaaagcgttaccccatccgccc |
39557410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 39556806 - 39556889
Alignment:
| Q |
17 |
agtaagtggtaactctctttcatctaatcttcacaaaagtcttccttgtaaatttctaatgcattccatgattaccacgtgtcc |
100 |
Q |
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| T |
39556806 |
agtaagtggtaactctctttcatctaatcttcacaaaagtcttccttgtaaatttctaatgcattccatgattaccacgtgtcc |
39556889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 39557011 - 39557097
Alignment:
| Q |
163 |
gatccaaaaataaagagttaaaagggatgcaagcatgtcacttttttatgagaatcaatacaaaatttgatgtatttatttataagg |
249 |
Q |
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| T |
39557011 |
gatccaaaaataaagagttaaaagggatacaagcatgtcacttttttatgagaatcaatacaaaatttgatgtatttatttataagg |
39557097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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