View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_low_13 (Length: 536)

Name: NF15541_low_13
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_low_13
NF15541_low_13
[»] chr3 (9 HSPs)
chr3 (261-472)||(45914121-45914332)
chr3 (162-308)||(45870450-45870596)
chr3 (152-269)||(2996482-2996600)
chr3 (182-284)||(20995053-20995155)
chr3 (312-480)||(20949491-20949660)
chr3 (182-284)||(20981894-20981996)
chr3 (224-269)||(20948718-20948763)
chr3 (420-482)||(7058607-7058669)
chr3 (436-474)||(20981712-20981750)
[»] chr4 (1 HSPs)
chr4 (153-497)||(3978065-3978401)
[»] chr5 (3 HSPs)
chr5 (410-480)||(7976609-7976679)
chr5 (144-210)||(38142202-38142268)
chr5 (410-467)||(7895207-7895264)
[»] chr6 (6 HSPs)
chr6 (174-267)||(7115545-7115638)
chr6 (174-267)||(7120617-7120710)
chr6 (174-267)||(7124021-7124114)
chr6 (188-240)||(7140762-7140814)
chr6 (188-240)||(8680376-8680428)
chr6 (188-240)||(8656677-8656729)
[»] chr7 (3 HSPs)
chr7 (165-286)||(44501431-44501552)
chr7 (144-267)||(32413580-32413703)
chr7 (162-288)||(6889120-6889246)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 261 - 472
Target Start/End: Complemental strand, 45914332 - 45914121
Alignment:
Q  261 tctggaaacatattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 360  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914332 tctggaaacgtattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 45914233  T
Q  361 gattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 460  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914232 gattcctctatatcgctgcaggctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 45914133  T
Q  461 atgtccagcggt 472  Q
    ||||||||||||    
T  45914132 atgtccagcggt 45914121  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 45870596 - 45870450
Alignment:
Q  162 tcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatct 261  Q
    |||||||| || |||| || ||||||||||| ||||| || |||| |||| |||||  |||||||||||||||  |||||||  ||||||||| ||||||    
T  45870596 tcagcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatct 45870497  T
Q  262 ctggaaacatattccttctcttatatttcatgctgatgattttcgaa 308  Q
     ||||||| | |||||||||||||||| ||| ||||||| |||||||    
T  45870496 ttggaaacgtcttccttctcttatattgcattctgatgactttcgaa 45870450  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 2996600 - 2996482
Alignment:
Q  152 aaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctc-aaga 250  Q
    ||||||||  |||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||   |||||||||||||| ||||||||| | |||     
T  2996600 aaagacaggctcagtgacttaactgattgtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatccccaaagg 2996501  T
Q  251 tataaggatctctggaaac 269  Q
    | ||||||||| |||||||    
T  2996500 tttaaggatctatggaaac 2996482  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 20995155 - 20995053
Alignment:
Q  182 gttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctc 281  Q
    ||||||||||| || ||||| ||| |||| ||||||  ||| |||||||||||| |||||||| ||| |||||||||||| ||||||| | ||||| |||    
T  20995155 gttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctc 20995056  T
Q  282 tta 284  Q
    |||    
T  20995055 tta 20995053  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 480
Target Start/End: Original strand, 20949491 - 20949660
Alignment:
Q  312 gaacttacaacatattcataaaatttgtctctaaaattt-atctcttcgtgattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttg 410  Q
    |||||||||| |||||||  ||||| || |||||||||| ||||||| |||||||||||||  |  |  | |||||||||||||||| | | |  ||| |    
T  20949491 gaacttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgattttaagcatcatattggtcg 20949590  T
Q  411 cttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 480  Q
     ||| ||||||||||| || | || ||||||||||| ||| ||  ||||||||||||||| ||| |||||    
T  20949591 tttagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagcgcttacgactt 20949660  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 20981996 - 20981894
Alignment:
Q  182 gttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctc 281  Q
    ||||||||||| || ||||| ||| |||| ||||||   || |||||||||||| |||||||| ||| |||||| ||||| ||||||| | ||||| |||    
T  20981996 gttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctc 20981897  T
Q  282 tta 284  Q
    |||    
T  20981896 tta 20981894  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 20948718 - 20948763
Alignment:
Q  224 gttcaaacttgtattttatcctcaagatataaggatctctggaaac 269  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  20948718 gttcaaacttgtgttttatccacaagatataacgatctctggaaac 20948763  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 7058669 - 7058607
Alignment:
Q  420 tcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggacttga 482  Q
    ||||||| |||| |||||| |||| |||||| ||||||| ||||||||||| |||||| ||||    
T  7058669 tcacatactcgaaagaattttgaaatatgctttttcacataatgtccagcgattaggagttga 7058607  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 474
Target Start/End: Complemental strand, 20981750 - 20981712
Alignment:
Q  436 attgtgaattatgctctttcacacaatgtccagcggtta 474  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  20981750 attgtgaattacgctatttcacacaatgtccagcggtta 20981712  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 153 - 497
Target Start/End: Original strand, 3978065 - 3978401
Alignment:
Q  153 aagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagata 252  Q
    |||||||| ||||||||||| ||||  || |||| ||||| |||||||| ||||| || |||||   ||| |||||||||||  |||||||| |||||||    
T  3978065 aagacagactcagcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagata 3978164  T
Q  253 taaggatctctggaaacatattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaa-attta 351  Q
    ||||||||| ||||||| | ||||| |||||| ||| ||| ||   || |      || || ||||||| | |||||  | ||| || ||||||  ||||    
T  3978165 taaggatctttggaaacgtcttcctactcttacattgcattcttcagact------ttggagcttacaagaaattcaccagattagtgtctaaagtttta 3978258  T
Q  352 tctcttcgtgattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctc 451  Q
    | |||||| |||||||||||  | || || |||||||||||||||| ||  |||||| ||||  |||||   | | |||| |  ||||||||||||||||    
T  3978259 tttcttcgcgattcctctatcgcactacaagctcttgattttaagcgtagtaacggtcgctttgagcct---aaactcgaaaagattgtgaattatgctc 3978355  T
Q  452 tttcacacaatgtccagcggttaggacttgaggtcaatggtgacat 497  Q
    |||||||||||||| | || ||||||||  |  |||||||||||||    
T  3978356 tttcacacaatgtcaaacgattaggactacatttcaatggtgacat 3978401  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 7976679 - 7976609
Alignment:
Q  410 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 480  Q
    ||||| |||||||| || || | || ||||||||||||||| |||||||||||||||||||||||||||||    
T  7976679 gcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactt 7976609  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 38142268 - 38142202
Alignment:
Q  144 gtgaaaacaaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaa 210  Q
    |||||||  |||||||| ||||||||||| |||| || ||||||||||| |||||||| ||||||||    
T  38142268 gtgaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaa 38142202  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 7895207 - 7895264
Alignment:
Q  410 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtcca 467  Q
    ||||| |||||||| || || | |||||||||||||||||| ||||||||||||||||    
T  7895207 gcttagagcctcacttactcaaaagaattgtgaattatgctatttcacacaatgtcca 7895264  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7115638 - 7115545
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7115638 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7115545  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7120710 - 7120617
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7120710 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7120617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7124114 - 7124021
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7124114 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7124021  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 7140814 - 7140762
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 7140762  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8680428 - 8680376
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 8680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8656729 - 8656677
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 8656677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 44501552 - 44501431
Alignment:
Q  165 gcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctg 264  Q
    |||||||| |||| ||| |||||||||| ||||| |||||||||||| |||||  ||| ||||| ||||| ||||| ||| | ||||  |||||||| ||    
T  44501552 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 44501453  T
Q  265 gaaacatattccttctcttata 286  Q
    ||||| | ||||| | ||||||    
T  44501452 gaaacgtcttcctgcacttata 44501431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 32413580 - 32413703
Alignment:
Q  144 gtgaaaacaaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatc 243  Q
    |||||||  |||||||| |||| || ||| ||||||| ||| | ||||| |||||||| | |||||| ||||||  ||| ||||||||||| ||||| ||    
T  32413580 gtgaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtc 32413679  T
Q  244 ctcaagatataaggatctctggaa 267  Q
    | ||||||  ||| ||||||||||    
T  32413680 cacaagatggaagaatctctggaa 32413703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 6889120 - 6889246
Alignment:
Q  162 tcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatct 261  Q
    |||| |||||| | ||||| ||||| ||||| ||||||||||||||| | |||| |  ||| ||||||||||| ||| |||||  |||||  ||  ||||    
T  6889120 tcagtgacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatct 6889219  T
Q  262 ctggaaacatattccttctcttatatt 288  Q
    ||||||| || ||||| | ||||||||    
T  6889220 ctggaaatatcttcctacccttatatt 6889246  T

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