View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15541_low_14 (Length: 514)
Name: NF15541_low_14
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 56 - 274
Target Start/End: Complemental strand, 40733357 - 40733146
Alignment:
| Q |
56 |
ttgtttttggtcatataacatgtttattctatcatttgactggtttgtgtgctaatcactatgcttatacagcttggcaattggcatggcttaacaaata |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40733357 |
ttgtttttggtcatataacatgttttttctatcatttgactggtttgtgtgctaatcactatgcttatacagcttggca-------tggcttaacaaata |
40733265 |
T |
|
| Q |
156 |
gatattttttatgatgtatggctttgtacgttgtaaacacactatatgcgataactttatatttcttgatgtttgtcttcattgtgggagatatatgctt |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40733264 |
gatattttttatgctgtatggctttgtacgttgtaaacacactatatgcgataactttatatttcttgatgtttgtcttcattgtgggagatatatgctt |
40733165 |
T |
|
| Q |
256 |
cgaaaacacttggttctga |
274 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40733164 |
cgaaaacacttggttctga |
40733146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 40733067 - 40732925
Alignment:
| Q |
360 |
acatctctactttgtcaattaggtattgttgtgtgtatacaggcctcgtctttaaatggggctcatttagccttaactctggttttagactgagttgttt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
40733067 |
acatctctactttgtcaattaggtattgttgtgtgtatccaggcctcgtctttaaatggggctcatttaaccttaactctggttttagacagggttgttt |
40732968 |
T |
|
| Q |
460 |
agcataaca----tgtcttcggtgctttttcaaaggttgttag |
498 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
40732967 |
agcataacatgcttgtctttggtgctttttcgaaggttgttag |
40732925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 40733376 - 40733345
Alignment:
| Q |
12 |
catcatcattagaattattttgtttttggtca |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40733376 |
catcatcattagaattattttgtttttggtca |
40733345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 48753183 - 48753215
Alignment:
| Q |
71 |
taacatgtttattctatcatttgactggtttgt |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
48753183 |
taacatgtttattctattatttgactggtttgt |
48753215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 38462684 - 38462758
Alignment:
| Q |
60 |
ttttggtcatataacatgtttattctatcatttgactggtttgtgtgc---taatcactatgcttatacagcttg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
38462684 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtgctaataatcactatgtttataaagcttg |
38462758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 52091157 - 52091089
Alignment:
| Q |
201 |
atgcgataactttatatttcttgatgtttgtcttcattgtgggagatatatgcttcgaaaacacttggtt |
270 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| | |||||||||||||| ||| ||||||||||| |
|
|
| T |
52091157 |
atgcgataattttatatttctagatgtttatcttcagtttgggagatatatgcatcg-taacacttggtt |
52091089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University