View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_15 (Length: 511)
Name: NF15541_low_15
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 3734007 - 3734348
Alignment:
| Q |
16 |
aatataaccgaatctagatgaatagtaatgtatagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaggtaaattg |
115 |
Q |
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| T |
3734007 |
aatataaccgaatctagatgaatagta-----tagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaagtaaattg |
3734101 |
T |
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| Q |
116 |
tacatgagcaattgcaaactcaaacttgttgggaatttgaatattttcatgtaggaatactagtaacattagt-------------aaagaacttcttca |
202 |
Q |
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| T |
3734102 |
tacatgagcaattgcaaactcaaacttgttgggaatttgaatattttcatgtaggaatactagtaacattagtaagagcatgcagcaaagaacttcttca |
3734201 |
T |
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| Q |
203 |
tattatgtttgagctagcaagaatttggatgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcnnnnnnn |
302 |
Q |
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| T |
3734202 |
tattatgtttgagctagcaagaatttggatgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcttttttt |
3734301 |
T |
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| Q |
303 |
nacaggacacccctccactgaacacctataataattcctgcaatcac |
349 |
Q |
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| T |
3734302 |
tacaggacacccctccactgaacacctataataattcctgcaatcac |
3734348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 401 - 511
Target Start/End: Original strand, 3734396 - 3734506
Alignment:
| Q |
401 |
caattaatttcatggtattccaatacatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
500 |
Q |
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| T |
3734396 |
caattaatttcatggtattccaatatatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
3734495 |
T |
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| Q |
501 |
ttcaatcagtg |
511 |
Q |
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| T |
3734496 |
ttcaatcagtg |
3734506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 48289018 - 48289093
Alignment:
| Q |
430 |
taccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtatttcaa |
505 |
Q |
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| T |
48289018 |
taccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccatcatccagaatttcaa |
48289093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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