View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15541_low_16 (Length: 505)
Name: NF15541_low_16
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 143 - 423
Target Start/End: Original strand, 7907152 - 7907434
Alignment:
| Q |
143 |
attcatttctctctgtattcactccaatggagttttctattctacattgtgaacttctacaatgcaaaaatacattcattattttcctnnnnnnnttaga |
242 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| ||| || | ||||| |
|
|
| T |
7907152 |
attcatttctctctttattcactccagttgagttttctattctacattgtgaatttttacaatgcaaaaatacattcatgattgtcttaaaaatattaga |
7907251 |
T |
|
| Q |
243 |
ttagagagttgcaaaccat-ctaaaccccaatggttttgaatgaaaaagtaagttgaatgatgatgatgcaagaaaaaagtatcgaaaatacgaagaaga |
341 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| || ||||| |||| |||||| | ||| |
|
|
| T |
7907252 |
ttggagagttgcaaaccattctaaaccccaatggttttgaattaaaaactaagttgaacgatgatg---cagaaaaaacatatcaaaaatatgtcgaacg |
7907348 |
T |
|
| Q |
342 |
cttgttgattccttgatttattccacaattacgaa----tatgtagttcatttaattagtttggtttccaaatttatgattgaatc |
423 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7907349 |
cttgttgattcctcgatttattccacaattacgaagacatatatagttcatttacttaatttggtttccaaatttatgattgaatc |
7907434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 7935162 - 7935019
Alignment:
| Q |
8 |
gagcacagaatccaaatccatttatcactctatccgacaatgcaaactgcgtccgagtggccctcattcccacaaagtgcttccaatattgagaccaaca |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7935162 |
gagcagagaatccaaatccatttatcactctatccgacaatgcaaactgcgtccgagtggctctcattccctcaaagtgcttccaatattgagaccaaca |
7935063 |
T |
|
| Q |
108 |
agccaaattgaattgacttggttaatgaagattgtattcatttc |
151 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
7935062 |
agccatattgaattgacttggttaatgaagattgttttaatttc |
7935019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 7907465 - 7907517
Alignment:
| Q |
428 |
agaattgttcattatttcttaggcaccaagaagcttggggtcaagtacgtgaa |
480 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
7907465 |
agaattgaacattatttcttaggcacgaagaagcttggagtcaagtatgtgaa |
7907517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University