View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_17 (Length: 492)
Name: NF15541_low_17
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 171 - 492
Target Start/End: Original strand, 36458064 - 36458367
Alignment:
| Q |
171 |
ttattttgaattagagcttgctataaattatttctatcacctaggaggagtatgccattggttggataataggctttcactttatgtggctctctatttc |
270 |
Q |
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| T |
36458064 |
ttatttcgacttagagctt-ctacaaattacttgtatcacctaggaggagcatgccattggttggataataggctttcactttatgtggctctctatttc |
36458162 |
T |
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| Q |
271 |
attcaagtttctaattcatgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
370 |
Q |
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| T |
36458163 |
a-----------------tgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
36458245 |
T |
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| Q |
371 |
ttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
470 |
Q |
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| T |
36458246 |
ttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
36458345 |
T |
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| Q |
471 |
atcttcttaaaagcttgccatg |
492 |
Q |
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| T |
36458346 |
atcttcttaaaagcttgccatg |
36458367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 36457800 - 36457924
Alignment:
| Q |
46 |
tcgaaaataggtagcagaccgaaaatgacattctgcggctggagtttatgctatttagaatgttatagaagttgaacattgtgtattggggttgagtacc |
145 |
Q |
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| T |
36457800 |
tcgaaaataggtagcagaccgaaaatgacattctctggctggagtttatgctatttagaatgttataaaagttgaacattgtgtattggggttgagtacc |
36457899 |
T |
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| Q |
146 |
tcatgtactcatttgcatcttattt |
170 |
Q |
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| T |
36457900 |
ttatgtactcatatgcatcttattt |
36457924 |
T |
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