View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_21 (Length: 413)
Name: NF15541_low_21
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 3734867 - 3734483
Alignment:
| Q |
20 |
cagtggccatttgaactctctgactacttgagtttcgatgacaatgaatggctacaaaacaatccaaccactgagtctttagtttttcaagccaacgaag |
119 |
Q |
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| T |
3734867 |
cagtggccatttgaactctctgactacttgagtttcgatgacaatgaatggctacaaaacaatccaaccactgagtctttagtttttcaagccaacgaag |
3734768 |
T |
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| Q |
120 |
tagcaggtggcagccacattgaggggtcttctagttcaatcagtaagccaatttttatcttactggtctctggtcgtcttgtgcagagacttgattatta |
219 |
Q |
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| T |
3734767 |
tagcaggtggtagccacattgaggggtcttctagttcaatcagtaagccaatttttatcttactggtctctggtcgtcttgtgcagagacttgattatta |
3734668 |
T |
|
| Q |
220 |
ataaattttgtcgttt-nnnnnnnnttatgtatattttctttagcttctaattattggtgttactgttgtcatgttttaggagatactaataatatgaat |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3734667 |
ataaattttgtcgtttaaaaaaaaattatgtatattttctttagcttctaattattggtgttactgttgtcatgttttaggagatactaataatatgaat |
3734568 |
T |
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| Q |
319 |
atgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattgaaatacttgatgatg |
403 |
Q |
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| T |
3734567 |
atgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattgaaatacttgatgatg |
3734483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 42272494 - 42272445
Alignment:
| Q |
179 |
ttactggtctctggtcgtcttgtgcagagacttgattattaataaatttt |
228 |
Q |
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| T |
42272494 |
ttacaggtctctgttcgtctagtgcagaaacttaattattaataaatttt |
42272445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 40999840 - 40999781
Alignment:
| Q |
171 |
tttttatcttactggtctctggtcgtcttgtgcagagacttgattattaataaattttgt |
230 |
Q |
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| T |
40999840 |
tttttatcttactggtccatgttcgtcttgtgcagagatttggtaattaataaattttgt |
40999781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 49282513 - 49282552
Alignment:
| Q |
195 |
gtcttgtgcagagacttgattattaataaattttgtcgtt |
234 |
Q |
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| T |
49282513 |
gtcttgtgcagagacttgtttattaataaattttgccgtt |
49282552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 2040928 - 2040864
Alignment:
| Q |
171 |
tttttatcttactggtctctggtcgtcttgtgcagagacttgattattaataaattttgtcgttt |
235 |
Q |
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| T |
2040928 |
tttttgtcttactggtccttgtttgtcttgtgcagggatttggttattaataaattttgccgttt |
2040864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 23144622 - 23144656
Alignment:
| Q |
196 |
tcttgtgcagagacttgattattaataaattttgt |
230 |
Q |
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| T |
23144622 |
tcttgcgcagagacttgattattaataaattttgt |
23144656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 16863206 - 16863251
Alignment:
| Q |
184 |
ggtctctggtcgtcttgtgcagagacttgattattaataaattttg |
229 |
Q |
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| T |
16863206 |
ggtctctgctcttcttgtgcagagacttggtgattaataaattttg |
16863251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 14752263 - 14752230
Alignment:
| Q |
194 |
cgtcttgtgcagagacttgattattaataaattt |
227 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
14752263 |
cgtcttgtgcagggacttgattattaataaattt |
14752230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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