View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15541_low_22 (Length: 372)
Name: NF15541_low_22
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 25075446 - 25075790
Alignment:
| Q |
20 |
acacgaacaacaatgaaaatttgatggtgttattgttagcacaactatcctctagtaggtatgttgatctctccctagaaccaagggataaaatcaccac |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25075446 |
acacgaacaacaatggaaatttgatggtgttattgttagcacaactatcctctagtaggtatgttgatctctctctagaaccaagggataaaatcaccac |
25075545 |
T |
|
| Q |
120 |
atgctttcttgaagnnnnnnntatactacgggtaggccttttggctccaagaagaaaaccaaacaacctgtcattttaaatgaaaacattaacgctctaa |
219 |
Q |
| |
|
||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |
|
|
| T |
25075546 |
atgtttttttgaagaaaaaaaaaaactacgggtaggccttttggctccaagaagaaaaccaaacaacctgtcattttaaatgaaaacactaacaccctaa |
25075645 |
T |
|
| Q |
220 |
tggaacctattttaacatagatccccttctagaaaaaatgtcatggaaactcttattaacttagatcggcg-----------tcatcacagtgcataatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25075646 |
tggaacctattttaacatagatccccttctagaaaaaatgtcatggaaactcttattaacttagatcggtgtcatcaagctatcatcacagtgcataatg |
25075745 |
T |
|
| Q |
309 |
gttctgatcatgtctcatgtgttactcttctcatcttctcctact |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25075746 |
gttctgatcatgtctcatgtgttactcttctcatcttctcctact |
25075790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 25076392 - 25076268
Alignment:
| Q |
149 |
gggtaggccttttggctccaagaagaaaaccaaacaacctgtcattttaaatgaaaacattaacgctctaatggaacctattttaacatagatccccttc |
248 |
Q |
| |
|
||||||||||||| |||| ||||| ||| ||||| |||||||||| |||||||||||| |||| | || | | ||||||| ||||||||||| || ||| |
|
|
| T |
25076392 |
gggtaggccttttagctctaagaataaacacaaaccacctgtcattataaatgaaaacactaacacccttaagaaacctatattaacatagat-ccattc |
25076294 |
T |
|
| Q |
249 |
tagaaaaaatgtcatggaaactctta |
274 |
Q |
| |
|
||| || ||||||| |||||||||| |
|
|
| T |
25076293 |
tagtaatgatgtcattgaaactctta |
25076268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 25096223 - 25096278
Alignment:
| Q |
55 |
ttagcacaactatcctctagtaggtatgttgatctctccctagaaccaagggataa |
110 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| | ||| ||||||||||||| |
|
|
| T |
25096223 |
ttagcacaaccatcctctagtaggaatgttgatctccctctataaccaagggataa |
25096278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 25096523 - 25096448
Alignment:
| Q |
25 |
aacaacaatgaaaatttgatggtgttattgttagcacaactatcctctagtaggtatgttgatctctccctagaac |
100 |
Q |
| |
|
|||||||||| |||| ||||||| |||| |||||||||| ||| |||||| |||||||||||||| | ||||||| |
|
|
| T |
25096523 |
aacaacaatggaaatatgatggtattatctttagcacaaccatcttctagtgggtatgttgatctccctctagaac |
25096448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University