View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_23 (Length: 369)
Name: NF15541_low_23
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 7622658 - 7623001
Alignment:
| Q |
17 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622658 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcata |
7622757 |
T |
|
| Q |
117 |
accatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622758 |
accatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataagga |
7622857 |
T |
|
| Q |
217 |
agcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622858 |
agcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatg |
7622957 |
T |
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| Q |
317 |
ctgtcatagcccaaaccactactgctgaacttgtctctgctcct |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
7622958 |
ctgtcatagcccaaaccactactgctgaacttgtgtctgttcct |
7623001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 7627209 - 7627552
Alignment:
| Q |
17 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627209 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcata |
7627308 |
T |
|
| Q |
117 |
accatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627309 |
accatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataagga |
7627408 |
T |
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| Q |
217 |
agcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627409 |
agcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatg |
7627508 |
T |
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| Q |
317 |
ctgtcatagcccaaaccactactgctgaacttgtctctgctcct |
360 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
7627509 |
ctgtcatagcccaaaccactgctgctgaacttgtgtctgttcct |
7627552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 7634345 - 7634688
Alignment:
| Q |
17 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7634345 |
acctttcaggataaaactcttcagggtctttccaattctcaggatcccttcctatggcccatgcattaacatacactaaagtttttggtttaatctcata |
7634444 |
T |
|
| Q |
117 |
accatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataagga |
216 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||| | |||||||||||| |||| |||||||||||| |
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| T |
7634445 |
accatctatgttacaattttctattgtttctcttggtactagtaatggtgatggtggaaataatctcattgtctctttcaccactgctttaagataaggt |
7634544 |
T |
|
| Q |
217 |
agcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatg |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7634545 |
agcttttcaatatcatcttcatttataaaatatttgtcttcatataagtttctgatttccatttgaaccttgttcatcactctaggattgttcatcaatg |
7634644 |
T |
|
| Q |
317 |
ctgtcatagcccaaaccactactgctgaacttgtctctgctcct |
360 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
7634645 |
ttgtcatagcccaaaccactattgctgaacttgtgtctgttcct |
7634688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 23610281 - 23610347
Alignment:
| Q |
17 |
acctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcatt |
83 |
Q |
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|||||||||||||||||| || ||||||||||||| | |||||||||| |||| ||||| ||||| |
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| T |
23610281 |
acctttcaggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatt |
23610347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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