View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_25 (Length: 354)
Name: NF15541_low_25
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 17107804 - 17107481
Alignment:
| Q |
12 |
aatactcctgatcaattccagatatgcagatccagccctgtggtctgatttgatgttacaagttaggtttaaaacctcactccacgtaaagagtt--aga |
109 |
Q |
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| T |
17107804 |
aatactcctgatcaattccagatatgctgatccagccctgtgaactggtttgatgttgcaagttaggtataaaacctcactccacgtaaagagtttaaga |
17107705 |
T |
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| Q |
110 |
taactgacgttgatgttccatgaatgcactgattggatactttgaagatcttccaccgcagagaatgaacgttcataaaaacctttacctggtgaggtaa |
209 |
Q |
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| T |
17107704 |
taactgaggttgatgttccatgaatgcactgattggatacttcgaagatcttccaccgcagagaatgaacgttcataaaaacctttacctggtgaggtaa |
17107605 |
T |
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| Q |
210 |
tcctctacttgccaataaacttccacaaactttgtagctttgcacggagttcttccaccttaagcgaagttgtacgtaccttttggctaaatcacaaggc |
309 |
Q |
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| T |
17107604 |
tcctctacttaccaataaacttccacaaactttgtagctttgca--gagttcttccaccttaagcgaagtt----gtaccttttggctaaatcacaaggt |
17107511 |
T |
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| Q |
310 |
tatatattccttttcagggatagtgataat |
339 |
Q |
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| T |
17107510 |
tatatattccttttcagggatagtgataat |
17107481 |
T |
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