View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_26 (Length: 353)
Name: NF15541_low_26
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 36574903 - 36575239
Alignment:
| Q |
1 |
caaaacattctcagagcggccactcacttggacgtataacgtgtctggagtcgtggtggcggctttgagaaggtaatcggtactccaccggatagcagct |
100 |
Q |
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| T |
36574903 |
caaaacattctcagagcggccactcacttggacgtataacgtgtctggagtcgtggtggcggctttgagaaggtaatcggtactccaccggatagcagct |
36575002 |
T |
|
| Q |
101 |
ctagcattgtcaatctggtcctgcattgagcttccaaattcaatgacactccatgctaataatgttgtagtaaaagccattggaagcccaaacttaaggt |
200 |
Q |
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| T |
36575003 |
ctagcattgtcaatctggtcctgcattgagcttccaaattcaatgacactccatgctaataatgttgtagtaaaagccattggaagcccaaacttaaggt |
36575102 |
T |
|
| Q |
201 |
tatcaccagcatcataataacctccaattaggtccacctgaaccaatatacatatagagaataatcaaacaaataattaacatgcatgttatattaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36575103 |
tatcaccagcatcataataacctccaattaggtccacctgaaccaatatacatatagagaataatcaaacaaataattaacatgcatgttatattaaact |
36575202 |
T |
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| Q |
301 |
tacatataaaaaatgagtcatgcaaatgagtatgtat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
36575203 |
tacatataaaaaatgagtcatgcaaatgagtatgtat |
36575239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 39419569 - 39419629
Alignment:
| Q |
167 |
gtagtaaaagccattggaagcccaaacttaaggttatcaccagcatcataataacctccaa |
227 |
Q |
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| T |
39419569 |
gtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaa |
39419629 |
T |
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