View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_28 (Length: 352)
Name: NF15541_low_28
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 7623425 - 7623085
Alignment:
| Q |
12 |
agaagaagtagattgcaagttttgcttaatgaagcacaggctttgttaactgagttttacttttctgatcattttccattattaggttgggttgatagaa |
111 |
Q |
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| T |
7623425 |
agaagaagtagattgcaagttttgcttaatgaagcacaggctttgttaactgagttttacttttctgatcattttccattgttaggttgggttgatagaa |
7623326 |
T |
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| Q |
112 |
tcaaaggaactcttgggaggcttgataaaaagttcaaggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctac |
211 |
Q |
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| T |
7623325 |
tcaaaggaactcttgggaggcttgataaaaagttcaaggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctaa |
7623226 |
T |
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| Q |
212 |
aaccaaggaacaagaagttgcagatatcatcgatatatttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagct |
311 |
Q |
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| T |
7623225 |
aaccaaggagcaagaagttgcagatatcattgatatatttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagct |
7623126 |
T |
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| Q |
312 |
gtgcttatggtatgatgaatgaaacttttgatgctttatta |
352 |
Q |
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| T |
7623125 |
gtgcttatggtatgatgaatgaaacttttgatgctttatta |
7623085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 7636514 - 7636205
Alignment:
| Q |
15 |
agaagtagattgcaagttttgcttaatgaagcacaggctttgttaactgagttttacttttctgatcattttccattattaggttgggttgatagaatca |
114 |
Q |
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| T |
7636514 |
agaagtagattgcaagttttgcttaatgaagctcaagctttgttggctgaattttacttttcagataattttccattgttgggttggattgatagagtca |
7636415 |
T |
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| Q |
115 |
aaggaactcttgggaggcttgataaaaagttcaaggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctacaac |
214 |
Q |
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| T |
7636414 |
aaggaactcttgggaggcttgataaaacattcaaggagttggatttgatataccaaagagttattgatgaccacatggataattcagcaaggcctaaaac |
7636315 |
T |
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| Q |
215 |
caaggaacaagaagttgcagatatcatcgatatatttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtg |
314 |
Q |
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| T |
7636314 |
taaggaacaagaagtagatgatattattgatatcttattgcagatgatgaatgatcactcactctcttttgatctcactcttgaccacatcaaagctgtg |
7636215 |
T |
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| Q |
315 |
cttatggtat |
324 |
Q |
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| T |
7636214 |
cttatggtat |
7636205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 7629731 - 7629421
Alignment:
| Q |
15 |
agaagtagattgcaagttttgcttaatgaagcacaggctttgttaactgagttttacttttctgatcattttccattattaggttgggttgatagaatca |
114 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||| ||| |||||||||| || |||||| |||||||| ||| |
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| T |
7629731 |
agaagtagattgcaagttttgcttaatgaagctcaagctttgttggctgaattttacttttcagataattttccattgtttggttggattgatagagtca |
7629632 |
T |
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| Q |
115 |
aaggaactcttgggaggcttgataaaaagttcaaggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctacaac |
214 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||| ||| |
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| T |
7629631 |
aaggaacacttgggaggcttgataaaacgttcaaggagttggatttgatataccaaagagttattgatgaccacatggattattcagcaaggcctaaaac |
7629532 |
T |
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| Q |
215 |
caaggaacaagaagttgcagatatcatcgatatatttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtg |
314 |
Q |
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| T |
7629531 |
taaggaacaagaagtagatgatattattgatatcttattacaaatgatgaatgatcattcactctcttttgatctcactctcgaccacatcaaagctgtg |
7629432 |
T |
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| Q |
315 |
cttatggtatg |
325 |
Q |
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| T |
7629431 |
cttatggtatg |
7629421 |
T |
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