View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_low_30 (Length: 338)

Name: NF15541_low_30
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_low_30
NF15541_low_30
[»] chr2 (11 HSPs)
chr2 (61-199)||(34756706-34756850)
chr2 (52-109)||(21134935-21134992)
chr2 (228-286)||(9068046-9068104)
chr2 (160-210)||(29981225-29981275)
chr2 (61-111)||(42152524-42152574)
chr2 (63-111)||(28816790-28816838)
chr2 (61-139)||(13654736-13654814)
chr2 (61-111)||(39926320-39926370)
chr2 (171-220)||(21135016-21135065)
chr2 (61-109)||(8691174-8691222)
chr2 (61-134)||(29759792-29759867)
[»] chr8 (8 HSPs)
chr8 (65-210)||(4895645-4895789)
chr8 (51-204)||(6377525-6377678)
chr8 (61-111)||(12478216-12478266)
chr8 (64-139)||(17898741-17898816)
chr8 (61-111)||(21138015-21138065)
chr8 (61-139)||(24674564-24674642)
chr8 (61-111)||(33091970-33092019)
chr8 (61-107)||(18983680-18983726)
[»] chr4 (12 HSPs)
chr4 (60-210)||(12115938-12116087)
chr4 (61-206)||(30253052-30253197)
chr4 (61-132)||(9438102-9438173)
chr4 (61-111)||(31928988-31929038)
chr4 (61-139)||(36083556-36083634)
chr4 (158-220)||(42739912-42739974)
chr4 (61-111)||(6017186-6017236)
chr4 (61-104)||(15034471-15034514)
chr4 (68-111)||(41955363-41955406)
chr4 (61-118)||(4651145-4651201)
chr4 (86-134)||(5689355-5689402)
chr4 (51-111)||(24621969-24622028)
[»] chr6 (6 HSPs)
chr6 (61-190)||(11761411-11761539)
chr6 (65-118)||(21053643-21053696)
chr6 (69-118)||(21076901-21076950)
chr6 (61-118)||(21077305-21077362)
chr6 (86-190)||(1120351-1120454)
chr6 (64-116)||(13480778-13480830)
[»] chr5 (9 HSPs)
chr5 (61-118)||(19935108-19935165)
chr5 (64-111)||(7159550-7159597)
chr5 (61-206)||(12317907-12318052)
chr5 (158-210)||(28753404-28753456)
chr5 (65-108)||(9738477-9738520)
chr5 (65-111)||(13695131-13695177)
chr5 (86-132)||(15426159-15426205)
chr5 (80-134)||(37551647-37551701)
chr5 (80-134)||(37654477-37654531)
[»] chr3 (10 HSPs)
chr3 (61-205)||(4245763-4245907)
chr3 (65-133)||(3143008-3143075)
chr3 (61-110)||(1319068-1319117)
chr3 (61-118)||(28715165-28715222)
chr3 (61-111)||(38239567-38239617)
chr3 (61-111)||(41199887-41199936)
chr3 (65-111)||(43447670-43447716)
chr3 (61-118)||(3172845-3172902)
chr3 (53-210)||(4293307-4293463)
chr3 (91-139)||(36869999-36870047)
[»] chr1 (9 HSPs)
chr1 (66-118)||(18225168-18225220)
chr1 (64-110)||(16640285-16640331)
chr1 (61-111)||(26686422-26686472)
chr1 (61-111)||(33169278-33169328)
chr1 (285-325)||(14507867-14507907)
chr1 (61-139)||(9923843-9923921)
chr1 (61-210)||(126521-126669)
chr1 (86-139)||(41093978-41094031)
chr1 (224-278)||(14507794-14507849)
[»] scaffold0108 (1 HSPs)
scaffold0108 (61-108)||(20958-21005)
[»] chr7 (4 HSPs)
chr7 (61-167)||(9236860-9236966)
chr7 (61-109)||(3355917-3355965)
chr7 (61-139)||(10650536-10650614)
chr7 (61-119)||(10656090-10656148)
[»] scaffold0655 (1 HSPs)
scaffold0655 (61-106)||(1516-1561)
[»] scaffold0129 (1 HSPs)
scaffold0129 (86-133)||(22025-22072)
[»] scaffold0127 (2 HSPs)
scaffold0127 (65-118)||(28494-28547)
scaffold0127 (65-118)||(35400-35453)


Alignment Details
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 34756850 - 34756706
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggta------ttacttgggaatgcaaatccttggcaatatccaaatgaaacatgttt 154  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||      |||| ||||||   ||||||||||||| ||||| | ||||| || ||    
T  34756850 ttcctgcggatcctaaaatcctaaggaaacaattacccacgaaggtattacatttacctgggaacctaaatccttggcaaaatccacaggaaacgtgatt 34756751  T
Q  155 ttagcggaattttcaccaaaatctgcaggtaattccccaggaaaa 199  Q
        |||||||| ||||||||||||||||||| ||| ||||||||    
T  34756750 cctacggaatttacaccaaaatctgcaggtaaatccgcaggaaaa 34756706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 21134935 - 21134992
Alignment:
Q  52 ttttcactcttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtatt 109  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  21134935 ttttcactcttcctgcggatcctaaaatcctaaggaaactattacccacaaaggtatt 21134992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 9068104 - 9068046
Alignment:
Q  228 tccatttccaaactgtaccatgtcattctcattctctttatgagattctgcattttagt 286  Q
    ||||||||||||||||||||  ||||||||||| | |||||||| ||||||||||||||    
T  9068104 tccatttccaaactgtaccacttcattctcattttttttatgagcttctgcattttagt 9068046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 29981225 - 29981275
Alignment:
Q  160 ggaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    |||||||||||||| ||| |||||||||||  |||||||||||||||||||    
T  29981225 ggaattttcaccaatatccgcaggtaattctgcaggaaaatcgagagtttc 29981275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 42152524 - 42152574
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  42152524 ttcctacggatcctaaaatcctaaggaaacaattacccacgaagatattac 42152574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 28816838 - 28816790
Alignment:
Q  63 cctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||| |||||| |||||||||| |||||||| ||||||    
T  28816838 cctgcggatcctaaaatcctaaggaaacaattatccacgaagctattac 28816790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 13654736 - 13654814
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    ||||||| ||||||||| ||||   ||  |||||||||||||||||||||| ||||||   ||||||||||||| ||||    
T  13654736 ttcctgcagatcctaaaatcctctggattcaattacccacgaaggtattacctgggaacctaaatccttggcaaaatcc 13654814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 39926320 - 39926370
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||||| | |||| ||||| ||||||||| ||||||||||    
T  39926320 ttcctgcggatcctaaaattctaatgaaacgattacccacaaaggtattac 39926370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 21135016 - 21135065
Alignment:
Q  171 caaaatctgcaggtaattccccaggaaaatcgagagtttccggtagtgta 220  Q
    ||||||| ||| |||||||| |||||||||||||||||||  ||||||||    
T  21135016 caaaatccgcatgtaattccgcaggaaaatcgagagtttctagtagtgta 21135065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 8691222 - 8691174
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtatt 109  Q
    ||||||||| | ||||| |||| ||||||||||||||||||||| ||||    
T  8691222 ttcctgcggtttctaaaatcctcacgaaacaattacccacgaagatatt 8691174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 29759792 - 29759867
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtat--tacttgggaatgcaaatccttggcaa 134  Q
    ||||||||| | | ||| |||| | ||||||||||||||| |||||||  ||| ||||| ||||||||||||||||    
T  29759792 ttcctgcggtttcaaaaatcctcaggaaacaattacccaccaaggtatattacctgggagtgcaaatccttggcaa 29759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 4895789 - 4895645
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcggaat 164  Q
    ||||||||||||| |||||| |||||||||| |||||||||||| || ||||| | ||||||| |||||| | ||  | |||||||||||   |||||||    
T  4895789 tgcggatcctaaaatcctaaggaaacaattaaccacgaaggtatcacctgggagtacaaatcc-tggcaaaacccgcaggaaacatgtttcctgcggaat 4895691  T
Q  165 tttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    ||||| | ||||| | ||||| |||  |||||||||||||| ||||    
T  4895690 tttcatccaaatccgaaggtatttctgcaggaaaatcgagattttc 4895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 6377678 - 6377525
Alignment:
Q  51 tttttcactcttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacat 150  Q
    ||||||||||||||||||||||||||| || | | ||||||||||||||||||| | |||| ||||||   |||| |||| ||| ||||| | ||||       
T  6377678 tttttcactcttcctgcggatcctaaaatcttcaggaaacaattacccacgaagctgttacatgggaacctaaattcttgacaaaatccacaggaaaacc 6377579  T
Q  151 gtttttagcggaattttcaccaaaatctgcaggtaattccccaggaaaatcgag 204  Q
    |||||  ||||||| |||||  ||||| ||||||| |||| ||| |||||||||    
T  6377578 gttttctgcggaatattcacataaatccgcaggtagttccgcagaaaaatcgag 6377525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12478266 - 12478216
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  12478266 ttcctgcggatcctaaaatcctaaggaaacaattacccacgaagatattac 12478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 17898816 - 17898741
Alignment:
Q  64 ctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    |||||| ||||||| |||  | |||| ||||||||||||||||||||| ||||| || ||||||||||||| ||||    
T  17898816 ctgcggttcctaaaatccacaggaaataattacccacgaaggtattacctgggagtgaaaatccttggcaaaatcc 17898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 21138015 - 21138065
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    |||||||| |||||||| || ||| ||||||||||||||||||||||||||    
T  21138015 ttcctgcgaatcctaaaatcataaggaaacaattacccacgaaggtattac 21138065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 24674564 - 24674642
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    |||||||||| | |||| |||||| |||| ||||||||||||||||||||| ||||||    |||||||||||| ||||    
T  24674564 ttcctgcggaacttaaaatcctaaggaaataattacccacgaaggtattacctgggaacctcaatccttggcaaaatcc 24674642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 33092019 - 33091970
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  33092019 ttcctgcggatc-taaaatcctaaggaaacaattacccacgaaggtattac 33091970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 18983680 - 18983726
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggta 107  Q
    ||||||||| ||||||| |||| | ||||||||||||||||||||||    
T  18983680 ttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggta 18983726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 12115938 - 12116087
Alignment:
Q  60 cttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagc 159  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||| |||| ||||||   || ||||||||||  |||  | ||||| |||||   |     
T  12115938 cttcctgcggatcctaaaattctaaggaaacaattacccacgaaggtgttacctgggaaccaaattccttggcaaattccgtaggaaacgtgtttactgt 12116037  T
Q  160 ggaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    ||||||||||   ||| | ||||| |||| |||||||||||||||||||||    
T  12116038 ggaattttcagtgaaacccgcaggaaatt-cccaggaaaatcgagagtttc 12116087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 30253197 - 30253052
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||||| | ||||| | || | |||||||||||||||||||||  ||||||||||   ||||||| || || ||||  | |||||| ||||   |||    
T  30253197 ttcctgcggttactaaaattctcaggaaacaattacccacgaaggtcatacttgggaacttaaatcctaggtaaaatccccaggaaacaggtttcctgcg 30253098  T
Q  161 gaattttcaccaaaatctgcaggtaattccccaggaaaatcgagag 206  Q
     ||||||||||  |||| |||||||||||| |||||||||||||||    
T  30253097 aaattttcaccccaatccgcaggtaattccacaggaaaatcgagag 30253052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 9438173 - 9438102
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggc 132  Q
    ||||||||||||||| | |||||  |||||||||||||| |||| |||||| ||||| ||||||||||||||    
T  9438173 ttcctgcggatcctagaatcctagggaaacaattacccaagaagatattacctgggagtgcaaatccttggc 9438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 31928988 - 31929038
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  31928988 ttcctgcagatcctaaaatcctaacgaaacaattacccgcgaaggtattac 31929038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 36083634 - 36083556
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    ||||||||| ||||||| |||| | |||||||||||||||||||||||||| ||||||    |||||||||||| ||||    
T  36083634 ttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaaatcc 36083556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 42739912 - 42739974
Alignment:
Q  158 gcggaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttccggtagtgta 220  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||  ||||||||    
T  42739912 gcggaattatcaccaaaatccgcaggtaattccccaggaatatcgagggtttctagtagtgta 42739974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 6017236 - 6017186
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||| ||||||||||| || ||| ||||||||||||||||||||||||||    
T  6017236 ttcctacggatcctaaaatcataaggaaacaattacccacgaaggtattac 6017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 15034471 - 15034514
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaag 104  Q
    ||||||||||||||||| || ||| |||||||||||||||||||    
T  15034471 ttcctgcggatcctaaaatcttaaggaaacaattacccacgaag 15034514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 41955406 - 41955363
Alignment:
Q  68 ggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    |||||||||| ||||||  |||||||||||||||||||||||||    
T  41955406 ggatcctaaaatcctaagaaaacaattacccacgaaggtattac 41955363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 4651201 - 4651145
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    |||||||||||| |||| || ||| |||||||||| ||||||||||||||| ||||||    
T  4651201 ttcctgcggatcttaaaatcttaaggaaacaatta-ccacgaaggtattacctgggaa 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 5689402 - 5689355
Alignment:
Q  86 gaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaa 134  Q
    ||||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  5689402 gaaacaattacccacga-ggtattacctggaagtgcaaatccttggcaa 5689355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 24622028 - 24621969
Alignment:
Q  51 tttttcactcttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||  ||||| |||||| |||| |||||| |||||||||||||||||| |||||||    
T  24622028 tttttcacctttcctacggatc-taaaatcctaaggaaacaattacccacgaaagtattac 24621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 11761411 - 11761539
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||||||| | ||||   ||| ||||||||| ||||  | |||||| ||||   |||    
T  11761411 ttcctgcggatcccaaa-tcctaaggaaacaattacccacgaaggtattacctaggaacctaaaaccttggcaaaatccgcaggaaacaggtttgctgcg 11761509  T
Q  161 gaattttcaccaaaatctgcaggtaattcc 190  Q
    | ||||||||||||||   |||||||||||    
T  11761510 ggattttcaccaaaatgctcaggtaattcc 11761539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 21053696 - 21053643
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||||||| || | | ||| |||||||||||||||||||||||||||||    
T  21053696 tgcggatcctaaaatcgtcaggaatcaattacccacgaaggtattacttgggaa 21053643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 21076950 - 21076901
Alignment:
Q  69 gatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||| |||| | ||| |||||||||||||||||||||||||||||    
T  21076950 gatcctaaaatcctcaggaatcaattacccacgaaggtattacttgggaa 21076901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 21077305 - 21077362
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||||||||||| |||| | ||| |||||| ||||||||| ||||| ||||||    
T  21077305 ttcctgcggatcctaaaatcctcaggaatcaattaaccacgaaggcattacctgggaa 21077362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 1120454 - 1120351
Alignment:
Q  86 gaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcggaattttcaccaaaatctgcaggta 185  Q
    |||||||||| |||||||||   ||| ||||||| ||||||||||| || ||||  | |||||   ||||| |||||||||||||  ||||| |||||||    
T  1120454 gaaacaattatccacgaaggatatacctgggaat-caaatccttggtaaaatccgcaggaaacggattttttgcggaattttcacacaaatccgcaggta 1120356  T
Q  186 attcc 190  Q
    |||||    
T  1120355 attcc 1120351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 13480778 - 13480830
Alignment:
Q  64 ctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttggg 116  Q
    |||||||||| ||| |||||| |||||||||||| |||||| ||| |||||||    
T  13480778 ctgcggatccgaaaatcctaaggaaacaattaccgacgaagctataacttggg 13480830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 19935108 - 19935165
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||    
T  19935108 ttcctgcggatcctaaaatcctaaggaaacaattacccatgaaggtattacctgggaa 19935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 7159550 - 7159597
Alignment:
Q  64 ctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  7159550 ctgcggatcctaaaatcctaaggaaacaattacccacgaaggtattac 7159597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 12317907 - 12318052
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||| |||| |||| |||| | |||||||||||||||||||||  ||| ||||||   |||||||| |||| ||||| | ||||  |||||   |||    
T  12317907 ttcctgcagatcataaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatccttagcaaaatccataggaaatttgtttcctgcg 12318006  T
Q  161 gaattttcaccaaaatctgcaggtaattccccaggaaaatcgagag 206  Q
     |||||||||| ||||  || ||||||||| | |||||||||||||    
T  12318007 aaattttcacctaaattcgccggtaattccgctggaaaatcgagag 12318052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 28753456 - 28753404
Alignment:
Q  158 gcggaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    |||||| ||| | |||||| ||||||||||||| |||||||||||||||||||    
T  28753456 gcggaaattttaacaaaatatgcaggtaattccgcaggaaaatcgagagtttc 28753404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 9738520 - 9738477
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtat 108  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||    
T  9738520 tgcggatcctaaaatcctaaggaaacaattacctacgaaggtat 9738477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 13695177 - 13695131
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||| || ||| |||||||||||||| |||||||||||    
T  13695177 tgcggatcctaaaatcgtaaggaaacaattacccatgaaggtattac 13695131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 15426159 - 15426205
Alignment:
Q  86 gaaacaattacccacgaaggtattacttgggaatgcaaatccttggc 132  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  15426159 gaaataattacccacgaaggtattacctgggagtgcaaatacttggc 15426205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 37551647 - 37551701
Alignment:
Q  80 cctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaa 134  Q
    ||||| ||||||| |||||||||||||||||| |||||||  |||||||| ||||    
T  37551647 cctaaggaaacaactacccacgaaggtattacctgggaatcaaaatccttagcaa 37551701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 37654477 - 37654531
Alignment:
Q  80 cctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaa 134  Q
    ||||| ||||||| |||||||||||||||||| |||||||  |||||||| ||||    
T  37654477 cctaaggaaacaactacccacgaaggtattacctgggaatcaaaatccttagcaa 37654531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 4245763 - 4245907
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||||| | ||||| |||| | |||||||||||||||||||||  ||| ||| ||   |||||||||| || ||||  | |||||| || |   |||    
T  4245763 ttcctgcggttactaaaatcctcaggaaacaattacccacgaaggttatacctggaaacttaaatccttggtaaaatccgcaggaaacaggtgtcctgcg 4245862  T
Q  161 gaattttcaccaaaatctgcaggtaattccccaggaaaatcgaga 205  Q
    ||||||||||| ||||| |||||||||||| ||||| ||||||||    
T  4245863 gaattttcacccaaatccgcaggtaattccgcaggataatcgaga 4245907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 3143008 - 3143075
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggca 133  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||| |||||||  ||||||||||||    
T  3143008 tgcggatcctaaaatcctaagaaaacaattacccacaaaggtattac-tgggaatctaaatccttggca 3143075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 1319068 - 1319117
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtatta 110  Q
    ||||||||| ||||||| |||| | |||||||||||||||||||||||||    
T  1319068 ttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtatta 1319117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 28715222 - 28715165
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||| | ||||| |||||| ||||||||||||| ||||||||||| |||||||    
T  28715222 ttcctgcggtttctaaaatcctaaggaaacaattacccgcgaaggtattagttgggaa 28715165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38239617 - 38239567
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||| |||||||| || ||||||  |||||||||||||||||||||||||    
T  38239617 ttcctacggatccttaaatcctaagaaaacaattacccacgaaggtattac 38239567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 41199887 - 41199936
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||    
T  41199887 ttcctgcggatcctaaaattctaaggaaacaattaccc-cgaaggtattac 41199936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 43447716 - 43447670
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  43447716 tgcggatcctaaaatcctaaggaaacaattactcacaaaggtattac 43447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 3172845 - 3172902
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    |||||||||||||| || |||||| ||||| ||||||||  |||||||||| ||||||    
T  3172845 ttcctgcggatcctcaaatcctaaggaaacgattacccataaaggtattacatgggaa 3172902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 4293463 - 4293307
Alignment:
Q  53 tttcactcttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgt 152  Q
    ||||||| ||||||| | | ||||| |||||| ||||||||||||||| |||||  ||| ||||||   || ||||| |||| ||||  | ||||   ||    
T  4293463 tttcacttttcctgcagtttctaaaatcctaaggaaacaattacccacaaaggttatacctgggaacctaagtccttagcaaaatccgcaggaaatg-gt 4293365  T
Q  153 ttttagcggaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    ||   |||||| |||||||||| || |||| | ||||| |||||||||||||||||||    
T  4293364 ttcctgcggaaatttcaccaaactccgcagatgattccgcaggaaaatcgagagtttc 4293307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 36870047 - 36869999
Alignment:
Q  91 aattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    ||||||||||||||||||||||||||||   ||||||||| ||| ||||    
T  36870047 aattacccacgaaggtattacttgggaacctaaatccttgacaaaatcc 36869999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 18225168 - 18225220
Alignment:
Q  66 gcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  18225168 gcggatcctaaaatcataacgaaacaattacccacgaaggtattacctgggaa 18225220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 16640285 - 16640331
Alignment:
Q  64 ctgcggatcctaaagtcctaacgaaacaattacccacgaaggtatta 110  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||    
T  16640285 ctgcggatcctaaaatcctaaggaaacaattacccacgaaggtatta 16640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 26686422 - 26686472
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  26686422 ttcctgcggatcctaaaatcctaaggaaacaattacccacgaagatattac 26686472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 33169278 - 33169328
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattac 111  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  33169278 ttcctgcggatcctaatatcctaaggaaacaattacccacgaaggtattac 33169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 14507867 - 14507907
Alignment:
Q  285 gtatcaactatcattgcaaagtaaggtgttgatgcatatat 325  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  14507867 gtatcaactatcattccaaagtaaggtgttgatgcatatat 14507907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 9923921 - 9923843
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    ||||||||| | ||||| |||| | |||||||||||||||||||||||||| ||||||    |||||||||||| ||||    
T  9923921 ttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaaatcc 9923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 126669 - 126521
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||||| | ||||| || | | |||||| |||||||||||||||||||||||||  |||| ||| | |||| ||||  | ||||||||||||  |||    
T  126669 ttcctgcggtttctaaaatcatcaggaaacatttacccacgaaggtattacttgggagagcaattccat-gcaaaatccgcaggaaacatgttttccgcg 126571  T
Q  161 gaattttcaccaaaatctgcaggtaattccccaggaaaatcgagagtttc 210  Q
    || || | ||||||  | | ||| || ||| |||||||||||||||||||    
T  126570 gatttataaccaaatcccgtaggaaaatccacaggaaaatcgagagtttc 126521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 41094031 - 41093978
Alignment:
Q  86 gaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    |||||||||||||||||||||||||| ||||| ||  |||||||||||| ||||    
T  41094031 gaaacaattacccacgaaggtattacatgggagtgttaatccttggcaaaatcc 41093978  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 14507794 - 14507849
Alignment:
Q  224 ggaatccatttccaaactgtaccatgtcattctcattc-tctttatgagattctgc 278  Q
    ||||||||||||||||||||||||  |||||||||||| | ||||| |||||||||    
T  14507794 ggaatccatttccaaactgtaccacttcattctcattcttttttataagattctgc 14507849  T

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Target: scaffold0108 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 20958 - 21005
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtat 108  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  20958 ttcctgcggatcctaaaatcctaaggaaacaattacccgcgaaggtat 21005  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 9236966 - 9236860
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatccaaatgaaacatgtttttagcg 160  Q
    ||||||||||||||||| ||||   ||| |||||||||||||||||||||| ||||||    ||||||||| || ||||  ||||||  ||||||  |||    
T  9236966 ttcctgcggatcctaaattcctcgggaatcaattacccacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaagttgttttctgcg 9236867  T
Q  161 gaatttt 167  Q
    |||||||    
T  9236866 gaatttt 9236860  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 3355965 - 3355917
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtatt 109  Q
    ||||||||||||||||| |||||| |||||||||||| || ||||||||    
T  3355965 ttcctgcggatcctaaaatcctaaggaaacaattacctacaaaggtatt 3355917  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 10650614 - 10650536
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaatgcaaatccttggcaatatcc 139  Q
    ||||||||||||||||| | |||  | ||||||||| ||| |||||||||| ||||| || | ||||||||||| ||||    
T  10650614 ttcctgcggatcctaaaattctacggtaacaattacacacaaaggtattacctgggagtgtatatccttggcaaaatcc 10650536  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 10656090 - 10656148
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaat 119  Q
    |||||| |||||||||| |||| | ||| |||||| ||||||||||||||| |||||||    
T  10656090 ttcctgtggatcctaaaatcctcaggaatcaattatccacgaaggtattacctgggaat 10656148  T

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Target: scaffold0655 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 1561 - 1516
Alignment:
Q  61 ttcctgcggatcctaaagtcctaacgaaacaattacccacgaaggt 106  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||    
T  1561 ttcctgcggatcctaaaatcttaaggaaacaattacccacgaaggt 1516  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 22072 - 22025
Alignment:
Q  86 gaaacaattacccacgaaggtattacttgggaatgcaaatccttggca 133  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||||    
T  22072 gaaacaattatccatgaaggtattacttgggagtgaaaatccttggca 22025  T

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Target: scaffold0127 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 28494 - 28547
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||||||| |||| | ||| ||||||| |||||||||||||| ||||||    
T  28494 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaa 28547  T

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Target: scaffold0127; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 35400 - 35453
Alignment:
Q  65 tgcggatcctaaagtcctaacgaaacaattacccacgaaggtattacttgggaa 118  Q
    ||||||||||||| |||| | ||| ||||||| |||||||||||||| ||||||    
T  35400 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaa 35453  T

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