View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_low_33 (Length: 299)

Name: NF15541_low_33
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_low_33
NF15541_low_33
[»] chr3 (1 HSPs)
chr3 (1-292)||(36574595-36574886)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 36574886 - 36574595
Alignment:
Q  1 ttttattagttaaaaaattgtttctaaatatcctaaatatttgcaggttggagagccgaacatggatcacaggtgttgggaaaggccggaggacatggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574886 ttttattagttaaaaaattgtttctaaatatcctaaatatttgcaggttggagagccgaacatggatcacaggtgttgggaaaggccggaggacatggac 36574787  T
Q  101 actccacgcaatgtgtataaggtctcggctcaaaatccaggttctgatgtcgcggctgagacggctgctgcattggcagcgtcttcattagtattcagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574786 actccacgcaatgtgtataaggtctcggctcaaaatccaggttctgatgtcgcggctgagacggctgctgcattggcagcgtcttcattagtattcagag 36574687  T
Q  201 atacagatccatcatattcctccaaattgcttcaagcagccatccaagtatgttcctcttctaaaacacaatttttcctagttttcatctct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574686 atacagatccatcatattcctccaaattgcttcaagcagccatccaagtatgttcctcttctaaaacacaatttttcctagttttcatctct 36574595  T

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