View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_34 (Length: 277)
Name: NF15541_low_34
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 12544414 - 12544164
Alignment:
| Q |
9 |
tatcttgaaatcaatggtctgctgacccatgatgaatccagataaagcattcattgaggaatttttacaatcaatcaggaataaataaatattcaaggat |
108 |
Q |
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| T |
12544414 |
tatcttgaaatcaatggtctg---acccatgatgaatccagataaagcattcattgaggaatttttacaatcaatcaggaataaata----ttcaaggat |
12544322 |
T |
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| Q |
109 |
tctatggcgctcacaaaggacatcatgattgaataatcaaattctaatttcactgtag---ctgtcaaatatagtaatagttcata-cacccatgcacgt |
204 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
12544321 |
tctatgacgctcacaaaggacatcatgattgaataatcaaattctaatttcactgtagcaactgtcaaatatagtaataggtcatagaacccatgcacgt |
12544222 |
T |
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| Q |
205 |
gaagttttgcaattgtaggagcaacaatccaaaaattgttgaattcatggaacaacat |
262 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12544221 |
gaagttttgcaattgtaggagcaacagtccaaaaattgttgaattcatggaacaacat |
12544164 |
T |
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