View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_36 (Length: 270)
Name: NF15541_low_36
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 38097297 - 38097074
Alignment:
| Q |
35 |
tgagtttcaataataattgaactataac--acacacatataatgtaaaaattattaaactcaaaatattatttatcttaactaacctgatcccatggcct |
132 |
Q |
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| T |
38097297 |
tgagtttcaataataattgaactataacgtacacacacataatgtaaaaattattaagctcaaaatattatttatcttaactaaccttatcccgtggcct |
38097198 |
T |
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| Q |
133 |
ggtccacaaaaaataccggttatagtgatgacacttgagccattgttaatggcgatgcaatcgtcacctacaagttaatgaaaaataattaaagaaaatt |
232 |
Q |
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| T |
38097197 |
ggtccacaaaaagtaccggttatggtgatgacacttgagccattgttaatggcgatgcaatcgtcacctacaagttaatgaaaaataattaaagaaaatt |
38097098 |
T |
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| Q |
233 |
gagatgaaaatcaaacaaatttaa |
256 |
Q |
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| T |
38097097 |
gagatggaaatcaaacaaatttaa |
38097074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 21551613 - 21551490
Alignment:
| Q |
81 |
aattattaaactcaaaatattatttatcttaactaacctgatcccatggcctggtccacaaaaaataccggttatagtgatgacacttgagccattgtta |
180 |
Q |
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| T |
21551613 |
aattattaaactgtgaatattatttaacttaatttacctgatgccatggccaggtccacaaaaaacaccggttatgttgataaatcttgagccggagtta |
21551514 |
T |
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| Q |
181 |
atggcgatgcaatcgtcacctaca |
204 |
Q |
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| T |
21551513 |
attgcgatgcaatcatcacctaca |
21551490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 19056789 - 19056897
Alignment:
| Q |
116 |
acctgatcccatggcctggtccacaaaaaataccggttatagtgatgacacttgagccattgttaatggcgatgcaatcgtcacctacaagttaatgaaa |
215 |
Q |
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| T |
19056789 |
acctgatgccatggccaggtccacaaagaacaccagttatgttaataaaattggagccagagttaattgcgatgcaatcgtcacctataaaataatggaa |
19056888 |
T |
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| Q |
216 |
aataattaa |
224 |
Q |
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|||| |||| |
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| T |
19056889 |
aatagttaa |
19056897 |
T |
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