View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_37 (Length: 269)
Name: NF15541_low_37
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 31075561 - 31075310
Alignment:
| Q |
1 |
ttgatatggatattgtgaactttaagttttcaaataaaacttattcattctgaacctaaatgtaccatttattaaacaaatcaaatggagtagtttttaa |
100 |
Q |
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| T |
31075561 |
ttgatatggatattgtgaactttaagttttcaaataaaacttattcattgtgaacccaaatgtaccagttattaaacaaatcaaatggagtagtttttaa |
31075462 |
T |
|
| Q |
101 |
ataacttgaaattaatgaacaggtttcttgacaaggctgctataatagaagacacacatgttgatcaaaaacacaatccatggagattagctacagtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31075461 |
ataacttgaaattaatgaacaggtttcttgacaaggctgctataatagaagacacacatgttgatcaaaaacacaatccatggagattagctacagtgac |
31075362 |
T |
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| Q |
201 |
aagagtagaagaaacaaagcttattctgaatgtaattcccatatggctaact |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31075361 |
aagagtagaagaaacaaagcttattctgaatgtaattccaatatggctaact |
31075310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 31064080 - 31063933
Alignment:
| Q |
101 |
ataacttgaaattaatgaacaggtttcttgacaaggctgctataatagaagacacacatgttgatcaaaaacacaatccatggagattagctacagtgac |
200 |
Q |
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|||||||||||| | |||| |||||||||||||||||||| ||| |||||||||| | |||| ||| |||||||||||||||||||||||| |||||||| |
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| T |
31064080 |
ataacttgaaatga-tgaataggtttcttgacaaggctgcaatattagaagacacgcctgttaatccaaaacacaatccatggagattagcaacagtgac |
31063982 |
T |
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| Q |
201 |
aagagtagaagaaacaaagcttattctgaatgtaattcccatatggcta |
249 |
Q |
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|||||| ||||||||||||||| |||| || |||| |||||||||||| |
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| T |
31063981 |
aagagttgaagaaacaaagcttgttcttaacataatccccatatggcta |
31063933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 31057996 - 31057849
Alignment:
| Q |
104 |
acttgaaattaatgaacaggtttcttgacaaggctgctataatagaagacacacatgttgatcaaaaacacaatccatggagattagctacagtgacaag |
203 |
Q |
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||||||||| |||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||| || || ||||||||||||||| | ||||||||||| |
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| T |
31057996 |
acttgaaatgaatgaataggtttctagacaaggctgcgataatcgaagagaaatatggtgagcaggaagtgaatccatggagattaacgacagtgacaag |
31057897 |
T |
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| Q |
204 |
agtagaagaaacaaagcttattctgaatgtaattcccatatggctaac |
251 |
Q |
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||| || || ||||||||| | |||| || |||||||||||||||| |
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| T |
31057896 |
agtggaggagacaaagcttgtcttgaacatagttcccatatggctaac |
31057849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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