View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_low_5 (Length: 660)

Name: NF15541_low_5
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_low_5
NF15541_low_5
[»] chr4 (2 HSPs)
chr4 (14-642)||(3472350-3472995)
chr4 (413-522)||(21545069-21545179)
[»] chr1 (2 HSPs)
chr1 (454-522)||(1575925-1575993)
chr1 (447-522)||(32929777-32929853)
[»] chr3 (2 HSPs)
chr3 (474-522)||(34273103-34273151)
chr3 (27-59)||(34273501-34273533)
[»] chr7 (2 HSPs)
chr7 (465-517)||(36525708-36525760)
chr7 (455-513)||(21535984-21536042)
[»] chr5 (1 HSPs)
chr5 (454-510)||(27874427-27874483)
[»] chr6 (1 HSPs)
chr6 (473-522)||(25006584-25006633)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 642
Target Start/End: Complemental strand, 3472995 - 3472350
Alignment:
Q  14 ttatactaaaaactatttacaagtctatttataagtggcagaaaatgtagttttgctggatgaaatgttgctcgcccaacgactcgaggtttcttcaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  3472995 ttatactaaaaactatttacaagtctatttataagtggcagaaaatgtagtttcgctagatgaaatgttgctcacccaacgactcgaggtttcttcaaat 3472896  T
Q  114 ggagagaaaagacaactcatctttcaaagtcattaaattgttataccttagttggtgaaatgttgctc-----------------ttgcttttctccctg 196  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                 |||||||||||||||    
T  3472895 ggagagagaagacaactcatctttcaaagtcattaaattgttataccttagttggcgaaatgttgctcgaccaatgaagttgctcttgcttttctccctg 3472796  T
Q  197 gaactctttgtccatgctcgctctcagctcactcctagctcgtccaacgaagtattttgcctaggaaaacatggacttatcttactttgctcacttagaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||    
T  3472795 gaactctttgtccatgctcgctctcagctcactcctagctcgtccaacgaagcattttgcctaggaaaacgtggacttatcttactttgctcacttacaa 3472696  T
Q  297 cttgatttggctcgtccaacaaattgctttgtacccaggttcattataactttgtaaatatagtnnnnnnnnnnnnnnnnnnnnngtgatgaaaactaaa 396  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||                     |||||||||||||||    
T  3472695 cttgatttggctcgtccaacaaattgcattgtacc-aggttcattataactttgtaaatctagtaaaaaaattatctacaaaaaagtgatgaaaactaaa 3472597  T
Q  397 taatagcaatttactggcctaaaactacaattattatgtatttacaata-tttgagagtttttacctaaattacatgcaaaacaagttaacaagtgctat 495  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3472596 taatagcaatttgctggcctaaaactacaattattatgtatttacaataatttgagagtttttacctaaattacatgcaaaacaagttaacaagtgctat 3472497  T
Q  496 gaaaattaacatgattttgacacttatgagatgccttgcagcactcattaaaactcgtaattatgatgatgggttagtaaaataatacaaataaaaaatt 595  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  3472496 gaaaattaacatgattttgacacttatcagataccttgcagcactcattaaaactcgaaattatgatgatgggttactaaaataatacaaataaaaaatt 3472397  T
Q  596 cattgatttaaataaagcagtaggaatcaagaacattaaaataattg 642  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  3472396 cattgttttaaataaagcagtaggaatcaacaacattaaaataattg 3472350  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 522
Target Start/End: Complemental strand, 21545179 - 21545069
Alignment:
Q  413 gcctaaaactacaattattatgtatttacaatatttgaga-gtttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgatt 511  Q
    |||||||||||| | |||||| |||||||| ||  | ||| || |||||||| ||||| || ||||||||| || |||||| ||| |||||| || || |    
T  21545179 gcctaaaactactaatattatatatttacagtaaattagatgtgtttacctagattacttggaaaacaagtcaataagtgccatgcaaattatcaagaat 21545080  T
Q  512 ttgacacttat 522  Q
    |||||||||||    
T  21545079 ttgacacttat 21545069  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 1575925 - 1575993
Alignment:
Q  454 tttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat 522  Q
    |||||||| | ||||| ||||||| ||||||||||||| |||| |||||||||||||| ||||||||||    
T  1575925 tttttacccatattacttgcaaaataagttaacaagtgttatggaaattaacatgattatgacacttat 1575993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 522
Target Start/End: Original strand, 32929777 - 32929853
Alignment:
Q  447 ttgagagtttttacctaaattacatgcaaaacaagtt-aacaagtgctatgaaaattaacatgattttgacacttat 522  Q
    ||||| |||||||  |||||||| ||| ||||||||| || || || |||| ||| |||||||||||||||||||||    
T  32929777 ttgagggtttttatataaattacttgccaaacaagtttaataaatgttatgtaaactaacatgattttgacacttat 32929853  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 34273151 - 34273103
Alignment:
Q  474 aaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat 522  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  34273151 aaaacaagttaacaagtgttatgaaaattaacataattttggcacttat 34273103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 34273533 - 34273501
Alignment:
Q  27 tatttacaagtctatttataagtggcagaaaat 59  Q
    |||||||||||||||||||||||| ||||||||    
T  34273533 tatttacaagtctatttataagtgacagaaaat 34273501  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 36525760 - 36525708
Alignment:
Q  465 attacatgcaaaacaagttaacaagtgctatgaaaattaacatgattttgaca 517  Q
    ||||| ||| ||||||||||| ||||||||||||||| ||||||| |||||||    
T  36525760 attacttgcgaaacaagttaataagtgctatgaaaataaacatgaatttgaca 36525708  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 21536042 - 21535984
Alignment:
Q  455 ttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgatttt 513  Q
    ||||||||| ||||| |||||||||||| || ||||| |||| |||| |||||||||||    
T  21536042 ttttacctagattacttgcaaaacaagtcaataagtgatatggaaatcaacatgatttt 21535984  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 510
Target Start/End: Complemental strand, 27874483 - 27874427
Alignment:
Q  454 tttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgat 510  Q
    ||||||| || ||||| ||||||| ||||||| |||||||||||| |||||||||||    
T  27874483 tttttacttagattacttgcaaaataagttaataagtgctatgaatattaacatgat 27874427  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 25006633 - 25006584
Alignment:
Q  473 caaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat 522  Q
    |||||||||| || |||||||||| ||| ||||||||||||| |||||||    
T  25006633 caaaacaagtgaataagtgctatggaaactaacatgattttgtcacttat 25006584  T

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