View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_6 (Length: 645)
Name: NF15541_low_6
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5055091 - 5054805
Alignment:
| Q |
1 |
gattagtctttgcaattacgcgcaagcgaaacttttggcttacaannnnnnnn------gccaatggagtatgtgtttttaagtattgaaaactcaaatc |
94 |
Q |
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| T |
5055091 |
gattagtctttgcaattacgtgcaagggaaacttttggcttacaatttttttttgttttgccaatagagtatgtgtttttaagtattgaaaactcaaatc |
5054992 |
T |
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| Q |
95 |
ttcatgagagaaccaatcctataaaaaataattcaattgatccacaagaaactcatgtggctacacataatcaacctctaaccagcttccaagaaacaan |
194 |
Q |
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| T |
5054991 |
ttcatgagagaaccaatcctataaaaaataattcaattgatccacaagaaactcatgtggctacacataatcaacctctaaccagcttccaagaaacaat |
5054892 |
T |
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| Q |
195 |
nnnnnngattgtacattatcaataaggaagaggaacacatgagagaaatgagaaaaagggcatgaacaaggagtgtataacaaatgc |
281 |
Q |
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| T |
5054891 |
ttttttgattgtacattatcaataaggaagaggaacacatgagagaaatgagaaaaagtgcatgaacaaggagtgtataacaaatgc |
5054805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 442 - 638
Target Start/End: Complemental strand, 5054650 - 5054463
Alignment:
| Q |
442 |
gtgagatgtagtagtgaataagggacccaacgaacccagataatgtggaaaacccaatctttgtaactggagaatatctagtatgtatgtatgtaacaag |
541 |
Q |
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| T |
5054650 |
gtgagatgtagtagtgaataagggacccaacgaacccaaacaatgtggaaaacccaatctttgtaactggagaatatctagtatgtatgta----acaag |
5054555 |
T |
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| Q |
542 |
tattgtgatgtgatgtgatgagtgagggttagaatatatgtctgatgatgaagtgttcaaatgaaagagaaaaagagtaagatatggcataagatat |
638 |
Q |
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| T |
5054554 |
tattgtgatgtgatg-----agtgagggttagaatatatgtttgatgatgaagtgttcaaatgaaagagaaaaagagtaagatatggcataagatat |
5054463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 5054743 - 5054696
Alignment:
| Q |
343 |
ctataaggaacatagatttgagtataagaacagaagacaaggttacca |
390 |
Q |
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| T |
5054743 |
ctataaggaacatagatttgagtataagaacagaagacaaggttacca |
5054696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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