View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_7 (Length: 629)
Name: NF15541_low_7
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 25863048 - 25863434
Alignment:
| Q |
18 |
aaagcaataaaactcatcataaatatttatgtatacatcaaaattgttgatgccacaatgattgccgcagcggtaacttgacagaagaatgaatctcaca |
117 |
Q |
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| T |
25863048 |
aaagcaataaaactcatcataaatatttatgtatacatcaaaattgttgatgccacaatgattaccgcagcggtaacttgacagaagaatgaatctcatg |
25863147 |
T |
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| Q |
118 |
aattgataaaa-cattgcatataattatattttatatatgtgttttgcctcttaattaaataagatagcacaaacgattataacccaatgagtaaactaa |
216 |
Q |
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| T |
25863148 |
aattaataaaaacattgcatataattatattttatatatgtgttttgcctcttaattaaataaaatagcacaaacgattataacccaatgagtaaactaa |
25863247 |
T |
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| Q |
217 |
aatctagattcatgtagaattaagaccaagagacatcttat-----agtagccataaaatataacatatatcacaaaattcatgggaataaaataaacaa |
311 |
Q |
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| T |
25863248 |
aatctagattcatgtagaattaagaccaagaggcatcttatatatcaatagccataaaatataacagatatcacaaaattcatgtgaataaaataaacaa |
25863347 |
T |
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| Q |
312 |
taccgatgcaaggcttcaataggatccaaaatctaagtaattttttggaaagtgttgaagccacaatcaaacaaaacaagttttttc |
398 |
Q |
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| T |
25863348 |
taccgatgcaaggcttcaataggatccaaaatctaagtaattttttggaaagtgttgaagccacaatcaaacaaaacaagttttttc |
25863434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 443 - 618
Target Start/End: Original strand, 25863482 - 25863656
Alignment:
| Q |
443 |
catgtgcactgctcaaaagtagtgaaaacaaacctaccttaattcacatagaatttgacttgcgatgaacatcgcatatgatctcaaaggtaaagccatt |
542 |
Q |
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| T |
25863482 |
catgtgcactgctcaaaagtagtgaaaacaaacctaccttaattcacatagaatttgacttg-gatgaacatcgcacatgatctcaaaggtaaagcaatt |
25863580 |
T |
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| Q |
543 |
aaaactgcgagggaatttttagaaatcaaatacgagctgaaaacaatgaatacaagaaacataaacgattcagtat |
618 |
Q |
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| T |
25863581 |
aaaactgcgagggaatttttagaaatcaaatacgagctgaaaacaatgaataaaagaaacataaacgattcagtat |
25863656 |
T |
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