View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_low_8 (Length: 588)
Name: NF15541_low_8
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 37 - 580
Target Start/End: Original strand, 42925654 - 42926200
Alignment:
| Q |
37 |
atgttgtcacgtgctttggaatatttagaaggacttgtttaacgattttcatgagcattaatttgttggattaggccattgacactacctcctcacctag |
136 |
Q |
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| T |
42925654 |
atgttgtcacgtgctttggaatatttagaaggacttgtttaacgattttcatgagcattaatttgttggattaggccattgacacaacctcctcacctag |
42925753 |
T |
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| Q |
137 |
tcatacaaccaaacaaaagctattacaccgtttgttaaaattaattaatgttgtaattaatgtaaagagctcatttgatttgatcactgatctactataa |
236 |
Q |
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| T |
42925754 |
tcatacaaccaaacaaaagctattacaccgtttgttaaaattaattaatgttgtaattaatgtaaagagctcatttgatttgatcactgatctactataa |
42925853 |
T |
|
| Q |
237 |
tttatcaaacaattttttcttgatttgaccgctggtcccaataaatttcacatgtttagttgttttgtttactacaactagtattacactgcaacttcag |
336 |
Q |
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| T |
42925854 |
tttatcaaacaattttttcttgatttgaccgctggtcccaataaatttcacatgtttagttgttttgtttactacaactagtattacactgcaacttcag |
42925953 |
T |
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| Q |
337 |
tctcttactataaacactttcagatgattttacacacatatattaagtaatctattgaaatttgtatattaataatgtcttagttgtatagttgaaaaat |
436 |
Q |
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| T |
42925954 |
tctcttactataaacactttcagatgattttacacacatatattaagtaatctattgaaatttgtatattaataatgtcttagttgtatagttgaaaaat |
42926053 |
T |
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| Q |
437 |
gacaccataactaggtatgttgttttggtaataattatctagtactttagaaaatagttttaaaagccagttattttctatctaacgagacatatacaga |
536 |
Q |
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| T |
42926054 |
gacaccataactaggtatgttgttttggtaataattatctagtactttagaaaatagttttaaaagccagttattttctatctaacgagacatatataga |
42926153 |
T |
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| Q |
537 |
cattataagtaa---tattgtactacactttctagtacagtataatc |
580 |
Q |
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| T |
42926154 |
cattataagtaatactattgtactacactttctagtacagtataatc |
42926200 |
T |
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