View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_low_9 (Length: 578)

Name: NF15541_low_9
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_low_9
NF15541_low_9
[»] chr2 (4 HSPs)
chr2 (18-542)||(36165729-36166250)
chr2 (359-467)||(16078613-16078721)
chr2 (348-456)||(30433637-30433745)
chr2 (348-456)||(44691290-44691398)
[»] chr1 (3 HSPs)
chr1 (333-447)||(7953174-7953288)
chr1 (348-449)||(21970598-21970699)
chr1 (348-417)||(12170673-12170742)
[»] chr6 (2 HSPs)
chr6 (348-465)||(15841758-15841875)
chr6 (380-449)||(9296207-9296276)
[»] chr8 (6 HSPs)
chr8 (353-449)||(13960615-13960711)
chr8 (350-389)||(43247146-43247185)
chr8 (348-462)||(31400571-31400685)
chr8 (333-399)||(44682592-44682658)
chr8 (348-448)||(4902030-4902130)
chr8 (534-562)||(26037258-26037286)
[»] chr4 (1 HSPs)
chr4 (169-198)||(2439746-2439775)
[»] chr7 (1 HSPs)
chr7 (348-424)||(41448349-41448425)


Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 36166250 - 36165729
Alignment:
Q  18 agcagtcgttttgaaaattgagggtaataaaagtatgggacccgatggtctcaattttgctttcatcaaggctttcttgtaccttttgaaagggaatatt 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36166250 agcagtcgttttgaaaattgagggtaataaa-gtatgggacccgatggtctcaattttgctttcatcaaggctttcttgtaccttttgaaagagaatatt 36166152  T
Q  118 agattgatgttcgaccaattccatgggaatgaagttttgcccaagagcttcttgtcatactttgtggctttgattccaaaaattgataagttaaaagatt 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |      
T  36166151 agattgatgttcaaccaattccatgggaatgaagttttgcccaaaagcttgttgtcatactttgtggctttgattccaaaaattgataagttaaaaaaaa 36166052  T
Q  218 atagtctaatttcacttttggggtgcttgtataaactaattgtgaaagtgttggctaagaggatgcggtgttagcggtggatgaggttttggattgggcn 317  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||     
T  36166051 atcgtctaatttcgcttttggggtgcttgtataaactaattgtgaaagtgttggctaagaggatgcggtgttagcggtgaatgagattttggattgagca 36165952  T
Q  318 nnnnnngacgaaaggaatgtttaatctttgaggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtggg 417  Q
           || ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36165951 aaaaaaaacaaaaggaatgtttaatc--tgagttggatttcgaaaagacttacgactcggttgattggggtttcttagagtatacgttgaggagagtggg 36165854  T
Q  418 attttgttctaagtggattggatggatgaaggtgtgtgtatttggtggttcaatgcccatgcttgttaacgggagtcctacggaggaggtgagtattcaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36165853 attttgttctaagtggattggatggatgaaggtgtgtgtatttggtggttcaatgcccatgcttgttaacgggagtcctacggaggaggtgagtattcaa 36165754  T
Q  518 agagtccttttgtctggttgggagg 542  Q
    |||||||||||||||||||||||||    
T  36165753 agagtccttttgtctggttgggagg 36165729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 16078613 - 16078721
Alignment:
Q  359 gaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaaggtgtgtgtat 458  Q
    |||||| |||| |||||||| |||||| |||| || ||||||||||||||||||||||  |||||||||||||||||||  ||||||| ||  ||||| |    
T  16078613 gaaaaggcttatgactcggtggattggagttttttggagtatatgttgaggagagtggacttttgttctaagtggattgcttggatgagggcatgtgtct 16078712  T
Q  459 ttggtggtt 467  Q
    |||||||||    
T  16078713 ttggtggtt 16078721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 30433745 - 30433637
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    |||| ||||| || ||| |||| |||||||| | |||||| || || |||||||||||||||||||| || |||||||| || || || |  |||| |||    
T  30433745 aggttgattttgagaaggcttatgactcggtgggttggggatttttggagtatatgttgaggagagtaggtttttgttcaaaatgaatggcttggacgaa 30433646  T
Q  448 ggtgtgtgt 456  Q
    |||||||||    
T  30433645 ggtgtgtgt 30433637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 44691290 - 44691398
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    |||| |||||||| ||| | ||||| ||||| |||||| |||| || |||||||||||| | |||||||| ||  ||   ||||||||||  ||||||||    
T  44691290 aggttgatttcgagaaggcgtacgattcggtggattggagttttttggagtatatgttgggtagagtgggtttgagtaggaagtggattgcgtggatgaa 44691389  T
Q  448 ggtgtgtgt 456  Q
    || ||||||    
T  44691390 ggcgtgtgt 44691398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 7953174 - 7953288
Alignment:
Q  333 aatgtttaatctttgaggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtg 432  Q
    ||||||| ||| || |||| || || |||||| |||| |||||||| ||||||||||| || ||||| ||||||| ||||||||| ||| ||  ||||||    
T  7953174 aatgtttgatccttaaggttgactttgaaaaggcttatgactcggtggattggggttttttggagtacatgttgatgagagtggggtttggtgataagtg 7953273  T
Q  433 gattggatggatgaa 447  Q
    | | || ||||||||    
T  7953274 ggtgggttggatgaa 7953288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 21970598 - 21970699
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    ||||||| || || ||| ||||||| ||||| ||||||||||| || | |||||||||| |||||||||| ||||||  ||| ||||| | || ||||||    
T  21970598 aggtggactttgagaaggcttacgattcggtggattggggttttttggtgtatatgttgcggagagtgggtttttgtgataaatggatagaattgatgaa 21970697  T
Q  448 gg 449  Q
    ||    
T  21970698 gg 21970699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 12170673 - 12170742
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtggg 417  Q
    |||| ||||| |||||| |||||||||| || |||||||| || || | ||||||| |||||||||||||    
T  12170673 aggttgattttgaaaaggcttacgactccgtggattgggggtttttggtgtatatgatgaggagagtggg 12170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 465
Target Start/End: Original strand, 15841758 - 15841875
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    |||||||||| |||||| | || || ||||| ||||||||||| |||||||||||| ||   ||||| || |||||| |||||||| |  | ||||||||    
T  15841758 aggtggattttgaaaaggcatatgattcggtggattggggttttttagagtatatgatgtatagagttggtttttgtgctaagtgggtccggtggatgaa 15841857  T
Q  448 ggtgtgtgtatttggtgg 465  Q
    ||  ||||| ||||||||    
T  15841858 gggatgtgtttttggtgg 15841875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 449
Target Start/End: Original strand, 9296207 - 9296276
Alignment:
Q  380 gattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaagg 449  Q
    ||||||||||| || |||| |||||||   ||||| || |||||||| ||||||||||| ||||||||||    
T  9296207 gattggggttttttggagtgtatgttggatagagttggtttttgttcaaagtggattggttggatgaagg 9296276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 13960711 - 13960615
Alignment:
Q  353 gatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaagg 449  Q
    |||||||||||  |||||||||| || |||||||| ||||| | ||||||| ||| |||||||||||| ||| | || ||||| |  ||||||||||    
T  13960711 gatttcgaaaaagcttacgactcagtggattgggggttcttggtgtatatgatgaagagagtgggattgtgtccaaaatggatagcttggatgaagg 13960615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 43247146 - 43247185
Alignment:
Q  350 gtggatttcgaaaagacttacgactcggttgattggggtt 389  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  43247146 gtggattttgaaaagacttacgactccgttgattggggtt 43247185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 462
Target Start/End: Original strand, 31400571 - 31400685
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    ||||||||||||||||| | || ||||||||  ||||||| ||||| || || |||||||  |||||||| |||||| | || ||| |  | | ||||||    
T  31400571 aggtggatttcgaaaaggcctatgactcggtaaattggggcttcttggaatacatgttgaatagagtgggtttttgtgcaaaatgggtgaggtagatgaa 31400670  T
Q  448 ggtgtgtgtatttgg 462  Q
    ||||||||| |||||    
T  31400671 ggtgtgtgtctttgg 31400685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 44682592 - 44682658
Alignment:
Q  333 aatgtttaatctttgaggtggatttcgaaaagacttacgactcggttgattggggtttcttagagta 399  Q
    ||||||| || ||| |||||||||| |||||| |||||||  |||| |||||||||||||| |||||    
T  44682592 aatgtttgatttttaaggtggattttgaaaaggcttacgatgcggtagattggggtttcttggagta 44682658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 4902030 - 4902130
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgttctaagtggattggatggatgaa 447  Q
    ||||||| || || ||| |||| || ||||| ||||||||||| || | ||||||| |||| ||  |||| ||||||||||||||| | || ||||||||    
T  4902030 aggtggactttgagaaggcttatgattcggtggattggggttttttggtgtatatgatgagaaggatgggcttttgttctaagtgggtggggtggatgaa 4902129  T
Q  448 g 448  Q
    |    
T  4902130 g 4902130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Complemental strand, 26037286 - 26037258
Alignment:
Q  534 gttgggaggaaggacatgatatgacacag 562  Q
    |||||||||||||||||||||||||||||    
T  26037286 gttgggaggaaggacatgatatgacacag 26037258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 198
Target Start/End: Complemental strand, 2439775 - 2439746
Alignment:
Q  169 ttgtcatactttgtggctttgattccaaaa 198  Q
    ||||||||||||||||||||||||||||||    
T  2439775 ttgtcatactttgtggctttgattccaaaa 2439746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 41448349 - 41448425
Alignment:
Q  348 aggtggatttcgaaaagacttacgactcggttgattggggtttcttagagtatatgttgaggagagtgggattttgt 424  Q
    |||| ||||| |||||| ||||||| ||||| |||||||| || || ||||||||||||  |||| |||| ||||||    
T  41448349 aggttgattttgaaaaggcttacgattcggtcgattgggggtttttggagtatatgttggcgagattgggtttttgt 41448425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University