View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_high_4 (Length: 371)
Name: NF15542_high_4
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 163 - 356
Target Start/End: Original strand, 25574004 - 25574197
Alignment:
| Q |
163 |
cgaaacgccggagtgtacttcatctccaagctacaaaagcaacactccttctaacattccattacttcaccaacaatgcctcttcattccttctcacatt |
262 |
Q |
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| T |
25574004 |
cgaaacgccgcagtgtacttcacctccaagctacaaaagcaacactccttctcacattccattacttcaccaacaatgcctcttcattccttctcacatt |
25574103 |
T |
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| Q |
263 |
cccattcaaattttgacgattctaccctcacccgttcatcttaaccgattcgactcgtcttaactcggaagcgtgatcgagtatcagttcatag |
356 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25574104 |
cccattcacattttgacgattctaccctcacccgttcagcttaaccgattcgactcgtcttaacttggaagcgtgatcgagtatcagttcatag |
25574197 |
T |
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