View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_high_7 (Length: 322)
Name: NF15542_high_7
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 40113666 - 40113972
Alignment:
| Q |
14 |
agggtcaactgaaaatggaagcagtgaagggttgtcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaac |
113 |
Q |
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| T |
40113666 |
agggtcaactgaaaatggaagcagtgaagggttgtcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaac |
40113765 |
T |
|
| Q |
114 |
caaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtacttcttatcatacataaccaacgtctataatattacaaaaaattg |
213 |
Q |
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| T |
40113766 |
caaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtacttcttatcatacataaccaacgtctataatattacaaaaaattg |
40113865 |
T |
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| Q |
214 |
cttcatatggtttggtttggtatcctcacctatattcacatgtttcatacttcataataaagtaaatataaaattcatctcgacaaatatcatgaaacct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113866 |
cttcatatggtttggtttggtatcctcacctatattcacatgtttcatacttcataataaagtaaatataaaattcatctcgacaaatatcatgaaacct |
40113965 |
T |
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| Q |
314 |
agttgtt |
320 |
Q |
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||||||| |
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| T |
40113966 |
agttgtt |
40113972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 40120994 - 40121083
Alignment:
| Q |
81 |
tgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtact |
170 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
40120994 |
tgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgcgaccctttgttgaaacacaagatccatcttctaaggtact |
40121083 |
T |
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