View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_17 (Length: 238)
Name: NF15542_low_17
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 32925565 - 32925353
Alignment:
| Q |
16 |
cagttcaggtataaactgctggtgatccttgttgaagaagtttcatatcatcttatagataaacaacttgttgagaaactattaccattaccatcaaatt |
115 |
Q |
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| T |
32925565 |
cagtttaggtataaactgttggtgatccttgttgaagaagtttcat-----cttatagataaacaacttgttgagaaactattaccattaccatcaaatt |
32925471 |
T |
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| Q |
116 |
ggaactacac---ggtgcaatttaaaaaccaacaatagagaatccaattcctccacagtccacacacaaaaaatacgtctacactttttacatatactat |
212 |
Q |
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|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
32925470 |
ggaactgcacggtggtgcaatttaaaaaccaaccatagagaatccaattcctccaca---cac-----aaaaatacgtctacactttttacatatactat |
32925379 |
T |
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| Q |
213 |
tttttaagataactatgtttctggtc |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32925378 |
tttttaagataactatgtttctggtc |
32925353 |
T |
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