View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_18 (Length: 223)
Name: NF15542_low_18
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 46212160 - 46212365
Alignment:
| Q |
18 |
aatggtgatgtgagtggttagtgcttatacaaagagaaagcatttactaggtataaccaaccaaccaaggttaatctagttagtaaggttaggttttgta |
117 |
Q |
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| T |
46212160 |
aatggtgatgtgagtggttagtgcttatataaagagaaagcatttactaggtataaccaaccaaccaaggttaatctagttagtaaggttaggttttgta |
46212259 |
T |
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| Q |
118 |
ccactcattgttagaaagtgtaagtcgactatgaatgagataaatgttggatatatcaaagagatgacatatatatctagtccttaaagtttttgatcga |
217 |
Q |
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|||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46212260 |
ccactcattgttaggaagtgcaagtagactatgaatgagataaatgttggatatatcaaagagatgacatatatatttagtccttaaagtttttgatcga |
46212359 |
T |
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| Q |
218 |
catgat |
223 |
Q |
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|||||| |
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| T |
46212360 |
catgat |
46212365 |
T |
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