View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_2 (Length: 488)
Name: NF15542_low_2
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 46665700 - 46665319
Alignment:
| Q |
18 |
agatttaacaccatgcaatctgcaaagtttttccaccaagagaattaaattattgcacagttctttaattatagataagaaaattcttcaaatagctcac |
117 |
Q |
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| T |
46665700 |
agatttaacaccatgcaatctgcaaagtttttccaccaagagaattaaattcttgcacagttctttaattatagataagaaaattcttcaaatagctcac |
46665601 |
T |
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| Q |
118 |
aataagaacatacatgagatgacgagcttgttttgttgcatgcaagagaaacgatagatcttggaatataatgcactagctatttggaaacagaaaagta |
217 |
Q |
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| T |
46665600 |
aataagaacatacatgagatgacgagcttgttttgttgcatgcaagagaaacgatcgatcttggaatataatgcactagctatttggaaacagagaag-- |
46665503 |
T |
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| Q |
218 |
cgtaattataataatagtttggg-----aagtgttagcatttggcttaggacttttatagtttgggaagttagttacttagttcggtgtacatatagttt |
312 |
Q |
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| T |
46665502 |
-----------ttatagtttgggaagttaagtgttagca-ttggcttaggacttttatagtttgggaagttagttacttagtttggtgtac--atagttt |
46665417 |
T |
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| Q |
313 |
ctgttattgcttataactgcttataactgaatgtaactgaattagttacgcattaggaaagtcaataaagcttatataaaattggtttaatccttattgc |
412 |
Q |
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| T |
46665416 |
ctgttat----------tgcttataactgaatgtaactgaattagttacgcattaggaaagtcaataaagcttatataaaattggtataatccttattgc |
46665327 |
T |
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