View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_3 (Length: 450)
Name: NF15542_low_3
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 3604628 - 3604293
Alignment:
| Q |
7 |
agattattcttgcgtttaagaaacatgaactggtgtcttgtatctggcgaaatagatgacataattgtttcactttgcgtcttcaagttctttcatctca |
106 |
Q |
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| T |
3604628 |
agattcttcttgcgtttaagaaacatgaactggtgtcttgtatctggcgaaatagatgacataattgtttcactttgggtcttcaagttctttcatctca |
3604529 |
T |
|
| Q |
107 |
tatttttggtgggatgatttgtctgattttattagagaagatttctttaggggacatatatgacatggcaaatgatcgttttccataattaattctaaga |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3604528 |
tatttttggtgggatgatttgtctgattttattagggaagatttctttaggggacatatatgacatggcaaatgatcgttttccataattaattctaaga |
3604429 |
T |
|
| Q |
207 |
gtaagttagtatattgattaacaaaaaataccaatcaacatactaaccaacttcccctttcctcttagcaaaatcatagcatggtcttactaacaagaag |
306 |
Q |
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| T |
3604428 |
gtaagttagtatattgattaacaaaaaataccaatcaacatactaaccaacttcccctttcctcttagcaaaatcatagcatggtcttactaacaagaag |
3604329 |
T |
|
| Q |
307 |
caaccactattccaaattcaaacttcatttttacgg |
342 |
Q |
| |
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| T |
3604328 |
caaccactattccaaattcaaacttcatttttacgg |
3604293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 3603792 - 3603738
Alignment:
| Q |
338 |
tacgggtttcagtctttgctaagatggttatcgcttttaaacagttatagagatg |
392 |
Q |
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| T |
3603792 |
tacgggtttcagtctttgctaagatggttatcgcttttaaacagttatagagatg |
3603738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 27909287 - 27909379
Alignment:
| Q |
66 |
cataattgtttcactttgcgtcttcaagttctttcatctcatatttttggtgggatgatttgtctgattttattagagaagatttctttaggg |
158 |
Q |
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| T |
27909287 |
cataaatgtatcactttgtgtcttcaagttctttcttctcatatttttggtgggatgttttgcctgattttattagggaagatttctttaggg |
27909379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 55989984 - 55989855
Alignment:
| Q |
66 |
cataattgtttcactttgcgtcttcaagttctttcatctcatatttttggtgggatgatttgtctgattttattagagaagatttctttaggggacatat |
165 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |||| ||||||||| || ||||| | ||||| |||||| || |
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| T |
55989984 |
cataattgtttcactttgggtcttcaagttctttcttctcatatttttggtggggtgctttgcttgattttatcagggaagagtgcttta-gggacagat |
55989886 |
T |
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| Q |
166 |
atgacatggcaaatgatcgttttccataatt |
196 |
Q |
| |
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||| |||| || || ||||||||||||||| |
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| T |
55989885 |
atggcatgccatatagtcgttttccataatt |
55989855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 10876777 - 10876929
Alignment:
| Q |
43 |
cttgtatctggcgaaatagatgacataattgtttcactttgcgtcttcaagttctttcatctcatatttttggtgggatgatttgtctgattttattaga |
142 |
Q |
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||||||| | ||| |||||||| ||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||| | || ||||||||| ||| |
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| T |
10876777 |
cttgtattttgcgtaatagatggcataattatttcactttggatcttcacgttctttcttctcatatttttggtgggatgctatgcctgattttactagg |
10876876 |
T |
|
| Q |
143 |
gaagatttctttaggggacatatatgacatggcaaatgatcgttttccataatt |
196 |
Q |
| |
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|||||| |||||| |||||| ||||| |||| || || ||| |||||| ||||| |
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| T |
10876877 |
gaagatatcttta-gggacaaatatggcatgccatattatcattttccttaatt |
10876929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 10881848 - 10882000
Alignment:
| Q |
43 |
cttgtatctggcgaaatagatgacataattgtttcactttgcgtcttcaagttctttcatctcatatttttggtgggatgatttgtctgattttattaga |
142 |
Q |
| |
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||||||| | ||| |||||||| ||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||| | || ||||||||| ||| |
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| T |
10881848 |
cttgtattttgcgtaatagatggcataattatttcactttggatcttcacgttctttcttctcatatttttggtgggatgctatgcctgattttactagg |
10881947 |
T |
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| Q |
143 |
gaagatttctttaggggacatatatgacatggcaaatgatcgttttccataatt |
196 |
Q |
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|||||| |||||| |||||| ||||| |||| || || ||| |||||| ||||| |
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| T |
10881948 |
gaagatatcttta-gggacaaatatggcatgccatattatcattttccttaatt |
10882000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 24269114 - 24268991
Alignment:
| Q |
66 |
cataattgtttcactttgcgtcttcaagttctttcatctcatatttttggtgggatgatttgtctgattttattagagaagatttctttaggggacatat |
165 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||||| || ||||||||||||| |||||| || |
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| T |
24269114 |
cataattgtttcactttggatcttcaagttctttcttctcatatttttggtgggat-ttttgcctgatttta--agggaagatttcttta-gggacacat |
24269019 |
T |
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| Q |
166 |
atgacatggcaaatgatcgttttccata |
193 |
Q |
| |
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||| |||| || || || |||||||||| |
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| T |
24269018 |
atggcatgccatattattgttttccata |
24268991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 15561014 - 15561058
Alignment:
| Q |
113 |
tggtgggatgatttgtctgattttattagagaagatttctttagg |
157 |
Q |
| |
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||||||||| |||| ||||||||||||| ||||||||||||||| |
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| T |
15561014 |
tggtgggatactttgcctgattttattagggaagatttctttagg |
15561058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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