View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15542_low_4 (Length: 434)
Name: NF15542_low_4
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 53493276 - 53492989
Alignment:
| Q |
25 |
tccgacttgtttgactttggctttcgattgctctgacaggttgttgtagtgcggaattgattgagcactatgatatttctggtttatatattctgagacc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53493276 |
tccgacttgtttgactttggctttcgattgctctgacaggttgttgtagtgcggaattgattgagcactatgatatttctggtttatatattctgagacc |
53493177 |
T |
|
| Q |
125 |
atcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattgtaattattttatactcttgattagctagct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53493176 |
atcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattgtacttattttatactcttgattagctagct |
53493077 |
T |
|
| Q |
225 |
atagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgctttcttcatacat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53493076 |
atagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgc-ttcttcatacat |
53492989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 16072427 - 16072156
Alignment:
| Q |
32 |
tgtttgactttggctttcgattgctctgacaggttgttg-tagtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatcggc |
130 |
Q |
| |
|
|||||||| ||||||| ||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16072427 |
tgtttgaccatggcttttgattgctctaataggttgtcgctagtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatctgc |
16072328 |
T |
|
| Q |
131 |
agtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattgtaattattttatactcttgattagctagctatagag |
230 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
16072327 |
agtagagatatgggagactttgcaagtatgtttctcaacgatttgaatgcatttatatatattgtacttattttatactcttgattagctagctatggag |
16072228 |
T |
|
| Q |
231 |
ttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgctt |
302 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
16072227 |
ttgatgcagaataaataaaatttatgattctttccaaatggtgatgttttagtttttggtaaaactacgctt |
16072156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 53501052 - 53500922
Alignment:
| Q |
51 |
attgctctgacaggttgttgt-agtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagact |
149 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53501052 |
attgctctgacaggttgtttttagtgcgaaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagact |
53500953 |
T |
|
| Q |
150 |
ttgcaagtatgtttctcaatgatttgaatgc |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
53500952 |
ttgcaagtatgtttctcaacgatttgaatgc |
53500922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 53492941 - 53492848
Alignment:
| Q |
327 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53492941 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccctatg |
53492848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 53500892 - 53500803
Alignment:
| Q |
327 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccc |
416 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53500892 |
gctgagagttgctttcatatttcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccc |
53500803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 16072095 - 16072002
Alignment:
| Q |
327 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
16072095 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttaatccagagataaagaaaatgaatgttgagagctgctacttccctatg |
16072002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 45352425 - 45352557
Alignment:
| Q |
32 |
tgtttgactttggctttcgattgctctgacaggttgttgt-agtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatcggc |
130 |
Q |
| |
|
||||||||||| | ||| ||||| | | |||||||||||| | || |||| |||||||| |||||||||||||||||| |||||||| ||||| | | | |
|
|
| T |
45352425 |
tgtttgacttttgatttggattggttttacaggttgttgtgaatggggaaatgattgagtactatgatatttctggttgctatattctcagaccttggtc |
45352524 |
T |
|
| Q |
131 |
agtggaaatatgggagactttgcaagtatgttt |
163 |
Q |
| |
|
| ||| || ||||||| | ||||||||||||| |
|
|
| T |
45352525 |
aatggctatttgggagattatgcaagtatgttt |
45352557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University