View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_7 (Length: 359)
Name: NF15542_low_7
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 53180179 - 53179844
Alignment:
| Q |
19 |
ttttggggcgtctaaactttttgttcctttgtgattgattaaaacagatgaaatgcatacacaatacatacatagtaacaagaagttatgtgaagctcgt |
118 |
Q |
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| T |
53180179 |
ttttggggcgtctaaactttttgttcctttgtgattgattaaaacagatgaaatgcatacacaatacatacatagtaacaagaagttatgtgaagctcgt |
53180080 |
T |
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| Q |
119 |
gaagagaaagcaaattaaattaatatagcaatatctctagttatgatcatggcttgcatatccaatttgaactttcattggagactgttgttgtggtctt |
218 |
Q |
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| T |
53180079 |
gaagagaaagcaaattaaattaatatagcaatatctctagttatgatcatggcttgcatatccaatttgaactttcattggagactgttgttgtggtctt |
53179980 |
T |
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| Q |
219 |
agctgggcaactttaatggctaaaggtgaccacacgcgcatgtttgaataagtagttggctagaaagggactttgtctcttccaagttcccagattatgg |
318 |
Q |
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| T |
53179979 |
agctgggcaactttaatgcctaaaggtgaccacacacgcatgtttgaataagtagttggctagaaagggactttgtctcttccaagttcccagattatgg |
53179880 |
T |
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| Q |
319 |
tggaacaagaactaagtaacatgcccctttgcttct |
354 |
Q |
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| T |
53179879 |
tggaacaagaactaagtaacatgccccattgattct |
53179844 |
T |
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