View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15542_low_8 (Length: 355)
Name: NF15542_low_8
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_8 |
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| [»] scaffold0023 (2 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0337 (1 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 9183024 - 9182685
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgatatatttacatttgttaattgttttttatgttataagtttgtactagagttt |
100 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9183024 |
caaaagagagatgacgaggctttaaaaggaaaagtggccactgattgatatatttacatttgttaattgttttttatgttataagtttgtactagagttt |
9182925 |
T |
|
| Q |
101 |
agtacaaaaccattagacatgaattaatcgtactttgatagattaaaccatttaacaatacaaatggtttcagtttataacatattgaaaccattaaaca |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
9182924 |
attacaaaaccattagacatgaattaatcgtactttgatagattaaaccatttaacaatacaaatggtttcagtttataaaattttgaaaccattaaaca |
9182825 |
T |
|
| Q |
201 |
attgtaatggtttccaaatataataatgaagaaatagtagttgcactttgtaaagtatggttgaatgttttcagggatttgcttgtgcatgttttgtgtt |
300 |
Q |
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|
|||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9182824 |
attgtaatggtttccatatatagtaatgcagaaatagtagttgcaatttgtaaagtatggttgaatgttttcaaggatttgcttgtgcatgttttgtgtt |
9182725 |
T |
|
| Q |
301 |
aaagatgtttgggttatggtagagcctatatggtcatctt |
340 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
9182724 |
aaagatgtttgagttatggtagagcctatatggtcatctt |
9182685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 130 - 340
Target Start/End: Complemental strand, 22038079 - 22037869
Alignment:
| Q |
130 |
gtactttgatagattaaaccatttaacaatacaaatggtttcagtttataacatattgaaaccattaaacaattgtaatggtttccaaatataataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22038079 |
gtactttgatagattaaaccatttaacaatacaaatggtttcagtttataacatattgaaaccattaaacaattgtaatggtttccagatataataatgc |
22037980 |
T |
|
| Q |
230 |
agaaatagtagttgcactttgtaaagtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgggttatggtagagcctat |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
22037979 |
agaaatagtagttgcactttgtaaagtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgagttatggtatagcctat |
22037880 |
T |
|
| Q |
330 |
atggtcatctt |
340 |
Q |
| |
|
||||||||||| |
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|
| T |
22037879 |
atggtcatctt |
22037869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28122795 - 28122843
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgat |
49 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
28122795 |
caaaagagagatgatgaagctttaaaaaaaaaagcggtcactgattgat |
28122843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 130 - 340
Target Start/End: Complemental strand, 44348230 - 44348020
Alignment:
| Q |
130 |
gtactttgatagattaaaccatttaacaatacaaatggtttcagtttataacatattgaaaccattaaacaattgtaatggtttccaaatataataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44348230 |
gtactttgatagattaaaccatttaacaatacaaatggtttcagtttataacatattgaaaccattaaacaattgtaatggtttccagatataataatgc |
44348131 |
T |
|
| Q |
230 |
agaaatagtagttgcactttgtaaagtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgggttatggtagagcctat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
44348130 |
agaaatagtagttgcactttgtaaagtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgagttatggtatagcctat |
44348031 |
T |
|
| Q |
330 |
atggtcatctt |
340 |
Q |
| |
|
||||||||||| |
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|
| T |
44348030 |
atggtcatctt |
44348020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44348998 - 44348950
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgat |
49 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||| |
|
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| T |
44348998 |
caaaagagagatgatgaagctttaaaaaaaaaagcggtcactgattgat |
44348950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 125912 - 125826
Alignment:
| Q |
254 |
agtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgggttatggtagagcctatatggtcatctt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
125912 |
agtatggttgaatgttttcagggatttgcttgtgcatgttttgtgttaaagatgtttgggtcatggtagagcctatacggtcatctt |
125826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 126795 - 126747
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgat |
49 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
126795 |
caaaagagagatgatgaagctttaaaaaaaaaagcggtcactgattgat |
126747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 293 - 357
Alignment:
| Q |
30 |
aaaagtggtcactgattgatatatttacatttgttaattgttttttatgttataagtttgtacta |
94 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| |
|
|
| T |
293 |
aaaagtggtcactgattgattaattcacatttgataattggtttaaatgttataagtgtgtacta |
357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16455 - 16384
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgatatatttacatttgttaattgtttt |
73 |
Q |
| |
|
|||| |||||||||| ||| |||| || ||||||||||||||||||||| ||| ||||||| |||||||||| |
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|
| T |
16455 |
caaaagagagatgataaggttttacaaa-aaaagtggtcactgattgataaattcacatttggtaattgtttt |
16384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 6261 - 6291
Alignment:
| Q |
71 |
tttttatgttataagtttgtactagagttta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6261 |
tttttatgttataagtttgtactagagttta |
6291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 13810 - 13840
Alignment:
| Q |
71 |
tttttatgttataagtttgtactagagttta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13810 |
tttttatgttataagtttgtactagagttta |
13840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 10563717 - 10563747
Alignment:
| Q |
71 |
tttttatgttataagtttgtactagagttta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10563717 |
tttttatgttataagtttgtactagagttta |
10563747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10564007 - 10564088
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgatatatttacatttgttaattgttttttatgttata |
83 |
Q |
| |
|
|||| |||||||||||||| |||| || ||||||||||||| |||||| ||| ||||||| |||||||||| |||||||| |
|
|
| T |
10564007 |
caaaagagagatgatgaggttttacaaa-aaaagtggtcactaattgattaattcacatttgataattgttttaaatgttata |
10564088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9561423 - 9561330
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgatatatttacatttgttaattgttttttatgttataagtttgtacta |
94 |
Q |
| |
|
|||| ||||||||| |||| |||| || ||||||||||||||||| || ||| | |||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
9561423 |
caaatgagagatgacgaggttttacaaaaaaaagtggtcactgatttattaattcaaatttaataattgttttaaatgttataagtgtgtacta |
9561330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54756181 - 54756229
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgat |
49 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
54756181 |
caaaagagagatgatgaagctttaaaaaaaaaagcggtcactgattgat |
54756229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 881 - 929
Alignment:
| Q |
1 |
caaaggagagatgatgaggctttaaaaggaaaagtggtcactgattgat |
49 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
881 |
caaaagagagatgatgaagctttaaaaaaaaaagcggtcactgattgat |
929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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