View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15542_low_9 (Length: 348)
Name: NF15542_low_9
Description: NF15542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15542_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 43802428 - 43802099
Alignment:
| Q |
17 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccc |
116 |
Q |
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| T |
43802428 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgcccc |
43802329 |
T |
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| Q |
117 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43802328 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaat |
43802229 |
T |
|
| Q |
217 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgaga |
316 |
Q |
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| T |
43802228 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgaga |
43802129 |
T |
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| Q |
317 |
gtagaatgtctacgaaatccctatgcttct |
346 |
Q |
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| T |
43802128 |
gtagaatgtctacgaagtccttatgcttct |
43802099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 43812997 - 43812686
Alignment:
| Q |
17 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccc |
116 |
Q |
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|||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| ||| |
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| T |
43812997 |
caagtggtcctgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatccc |
43812898 |
T |
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| Q |
117 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaat |
216 |
Q |
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||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| |
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| T |
43812897 |
aactacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaat |
43812798 |
T |
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| Q |
217 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgaga |
316 |
Q |
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||| |||| |||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||||| |
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| T |
43812797 |
gccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgaga |
43812698 |
T |
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| Q |
317 |
gtagaatgtcta |
328 |
Q |
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|||||||||||| |
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| T |
43812697 |
gtagaatgtcta |
43812686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
142 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
191 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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