View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_high_3 (Length: 427)
Name: NF15543_high_3
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 181 - 427
Target Start/End: Original strand, 14785744 - 14785991
Alignment:
| Q |
181 |
ctatgtacaaaaatttctaatagaactaacgatgaaagtttgtcacatttaaataaatgactaattcaatacnnnnnnnnnnnnn--gttcaggaagaca |
278 |
Q |
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| T |
14785744 |
ctatgtacaaaaatttctaatagaactaacaaggaaagtttgtcacatttaaataaatgactaattcaatacaaaaaaaaaaaaaaggttcaggaagaca |
14785843 |
T |
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| Q |
279 |
tatctaaaacttcaaattgctatnnnnnnnnnnctaaaattgaccatgatgttgttttaatcaagatcaattttttcatggaaattaaaagttcacacac |
378 |
Q |
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| T |
14785844 |
tatctaaaacttcaaattgctataaaaaaaaa-ctaaaattgaccatgatgttgttttaaccaagatcaattttttcatggaaattaaaagttcaaacac |
14785942 |
T |
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| Q |
379 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcac |
427 |
Q |
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| T |
14785943 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcac |
14785991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 14785556 - 14785720
Alignment:
| Q |
19 |
aggctggtgtgtattttttctagctgttgtgtgtttttctgtggcacggttggaagatctatttgtggctacaggttgtattgtgttgatgcagattgcn |
118 |
Q |
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| T |
14785556 |
aggctggtgtgtattttttctagctgttgtgtgtttttctgtggcacggttggaagatctatttgtggctacaggttgtattgtgttgatgcagattgct |
14785655 |
T |
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| Q |
119 |
nnnnnnnnnnnnnnnnnnngaatgactgtataattgtggtgcagaatggggaaaacatttttcta |
183 |
Q |
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| T |
14785656 |
ttttttgtggaatttttttgaatgactgtataattgtggtgcagaatggggaaaacatttttcta |
14785720 |
T |
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