View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_high_8 (Length: 339)
Name: NF15543_high_8
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 40635144 - 40634994
Alignment:
| Q |
16 |
atcaaagttaagtactttctcttgtctcgtagaagatgacaaaaataaaattatacgagtatcactattgctaaattaactaaaactagattgaggtccg |
115 |
Q |
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| T |
40635144 |
atcaaagtaaagtactttctcttgtctcgtagaagatgacaaaaataaaattatacgagtatcactattgctaaattaactaaaactagattgaggtccg |
40635045 |
T |
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| Q |
116 |
cgcgttgcgcaggtgtagaatagtagaatagtaaatgttacaatgaatgtg |
166 |
Q |
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| T |
40635044 |
cgcgttgcgcaggtgcagaatagtagaatagtaaatgttacaatgaatgtg |
40634994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 40634923 - 40634856
Alignment:
| Q |
258 |
gtgagtatgtacaaatctatcacaaaaacgattctataacat-ttttaccttttaaactcctaaattc |
324 |
Q |
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| T |
40634923 |
gtgagtatgtacaaatctaccacaaaaacgattctataacattttttaccttttaaactcgtaaattc |
40634856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 40634995 - 40634957
Alignment:
| Q |
187 |
tgtttttaaattgagagtgagaaccaaaaagaaatgagg |
225 |
Q |
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| T |
40634995 |
tgtttttaaattgagagtgagaaccaaaaagaaatgagg |
40634957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 26586357 - 26586316
Alignment:
| Q |
177 |
gtgagagttttgtttttaaattgagagtgagaaccaaaaaga |
218 |
Q |
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| T |
26586357 |
gtgagagttttgtttctaaattgagagtgagagcaaaaaaga |
26586316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 7733361 - 7733294
Alignment:
| Q |
100 |
actagattgaggtccgcgcgttgcgcaggtgtagaatagtagaatagtaaatgttacaatgaatgtga |
167 |
Q |
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| T |
7733361 |
actagattgaggcccgctcattgcgcaggtgtagaatagtaaaatggtaaatgttccgatgaatgtga |
7733294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 52418102 - 52418150
Alignment:
| Q |
177 |
gtgagagttttgtttttaaattgagagtgagaaccaaaaagaaatgagg |
225 |
Q |
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| T |
52418102 |
gtgagagttttgtttttaaattgagagtgagatcgaaaaagaaaagagg |
52418150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 16465098 - 16465054
Alignment:
| Q |
177 |
gtgagagttttgtttttaaattgagagtgagaaccaaaaagaaat |
221 |
Q |
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| T |
16465098 |
gtgagagatttgtttctaaattgagagtgagatcgaaaaagaaat |
16465054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 16472054 - 16472010
Alignment:
| Q |
177 |
gtgagagttttgtttttaaattgagagtgagaaccaaaaagaaat |
221 |
Q |
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||||||| ||||||| |||||||||||||||| | |||||||||| |
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| T |
16472054 |
gtgagagatttgtttctaaattgagagtgagaccgaaaaagaaat |
16472010 |
T |
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