View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15543_low_1 (Length: 868)

Name: NF15543_low_1
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15543_low_1
NF15543_low_1
[»] chr2 (4 HSPs)
chr2 (12-647)||(3945448-3946080)
chr2 (710-840)||(3946143-3946274)
chr2 (435-574)||(41335288-41335427)
chr2 (417-538)||(39741077-39741198)
[»] chr4 (5 HSPs)
chr4 (417-592)||(35202297-35202472)
chr4 (435-582)||(22483403-22483550)
chr4 (447-571)||(7435196-7435320)
chr4 (432-571)||(35721705-35721844)
chr4 (435-481)||(23663651-23663697)
[»] chr7 (1 HSPs)
chr7 (417-571)||(8132015-8132169)
[»] chr1 (2 HSPs)
chr1 (416-550)||(34645998-34646132)
chr1 (418-553)||(24878860-24878995)
[»] chr3 (1 HSPs)
chr3 (432-556)||(41086156-41086280)
[»] chr5 (1 HSPs)
chr5 (462-574)||(13481013-13481125)
[»] chr8 (3 HSPs)
chr8 (469-552)||(28437329-28437412)
chr8 (520-571)||(33740199-33740250)
chr8 (522-572)||(33823811-33823861)


Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 12 - 647
Target Start/End: Original strand, 3945448 - 3946080
Alignment:
Q  12 agcagagagggcataactgatgcattacttggtacagaagaagaactaaagattgaaccatatcttgaagtaaatccatttgtataaccattatgatcat 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945448 agcagagaaggcataactgatgcattacttggtacagaagaagaactaaagattgaaccatatcttgaagtaaatccatttgtataaccattatgatcat 3945547  T
Q  112 tggcttcactggacgtaaacccggatgaaaagcctaatccaatagtattcatctgaggctgaaaatcataacctgaacttgttgagagtctagagatatt 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945548 tggcttcactggacgtaaacccagatgaaaagcctaatccaatagtattcatctgaggctgaaaatcataacctgaacttgttgagagtctagagatatt 3945647  T
Q  212 gaaccttgagaatggaagattcacatcacaagagttactacttgataaaccataaaacataggactaatattatgatttaaggttgaatttgaagaagtg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945648 gaaccttgagaatggaagattcacatcacaagagttactacttgataaaccataaaacataggactaatattatgatttaaggttgaatttgaagaagtg 3945747  T
Q  312 gtgtttggtgtggaactaggagttgaagaaggagaagaagaaatagaagtatcaatggtggagggtattttgatgagagtagtattgttactacgtttgt 411  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945748 gtgtttggtgtggaactaggagtt---gaaggagaagaagaaatagaagtatcaatggtggagggtattttgatgagagtagtattgttactacgtttgt 3945844  T
Q  412 ttgagttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945845 ttgagttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttg 3945944  T
Q  512 tgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctgctgctgatgaagtttttga 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945945 tgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctgctgctgatgaagtttttga 3946044  T
Q  612 ccttgtttttccattatcttaacatcatctatttga 647  Q
    ||||||||||||||||||||||||||||||||||||    
T  3946045 ccttgtttttccattatcttaacatcatctatttga 3946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 710 - 840
Target Start/End: Original strand, 3946143 - 3946274
Alignment:
Q  710 tctagctagggtatgtaatgtaatgtatgagaaaa-taattaatatgttgatattctaatccaaaagctaagctacaaaattaattggaatggtcatgca 808  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3946143 tctagctagggtatgtaatgtaatgtatgagaaaaataattaatatgttgatattctaatccaaaagctaagctacaaaattaattggaatggtcatgca 3946242  T
Q  809 atttgtgtaaataattgtgcatggagatagct 840  Q
    ||||||||||||||||||||||||||||||||    
T  3946243 atttgtgtaaataattgtgcatggagatagct 3946274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 435 - 574
Target Start/End: Complemental strand, 41335427 - 41335288
Alignment:
Q  435 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagt 534  Q
    |||||||||||||||||||| |  | ||| |||||||||||||||||  | || |  || || || ||||||||||| |||||  | |||||||||||||    
T  41335427 ccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagt 41335328  T
Q  535 aacaaaactttgtgtttgatgagtcacaacgtggacactt 574  Q
    ||||||| ||||| || | ||| || ||||| ||||||||    
T  41335327 aacaaaattttgtattggttgattcgcaacgaggacactt 41335288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 39741198 - 39741077
Alignment:
Q  417 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 516  Q
    |||||| ||||| | ||||| |||||||||||||| || |  || |||||| | |||||||| | | |||||| ||| ||||||| |||||| || |  |    
T  39741198 ttgttttttctgcatccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaa 39741099  T
Q  517 aactgtagttgttgtagtaaca 538  Q
     ||||||||||||||| |||||    
T  39741098 gactgtagttgttgtaataaca 39741077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 417 - 592
Target Start/End: Complemental strand, 35202472 - 35202297
Alignment:
Q  417 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 516  Q
    |||||| ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||||| |||||||||||||| |    
T  35202472 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 35202373  T
Q  517 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctg 592  Q
    |||| ||||| || |||||||| || || ||||||||||| ||||||||||||||| | | |||||||||||||||    
T  35202372 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctg 35202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 582
Target Start/End: Original strand, 22483403 - 22483550
Alignment:
Q  435 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagt 534  Q
    ||||||||||||||||| || || ||||||||| | |||||||| |   | ||||  || ||||||| |||||||||||| | |||||| ||||||||||    
T  22483403 ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt 22483502  T
Q  535 aacaaaactttgtgtttgatgagtcacaacgtggacacttgagagctt 582  Q
    ||||||| || |||||   ||||||||| | |||||| || |||||||    
T  22483503 aacaaaatttggtgttgtttgagtcacatcttggacattttagagctt 22483550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 571
Target Start/End: Complemental strand, 7435320 - 7435196
Alignment:
Q  447 acatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttg 546  Q
    |||||||| ||||  |||||||||||||| || | | ||||||  || ||||| ||||| || || || | ||||||||||||| |||| ||||| ||||    
T  7435320 acatttcttagagcgccacctcttgtccagtaccttctgcaagtcttgcagaagtgtctgggctgagagagactgtagttgttgaagtagcaaaattttg 7435221  T
Q  547 tgtttgatgagtcacaacgtggaca 571  Q
    |||| | ||| ||||||||||||||    
T  7435220 tgttggttgattcacaacgtggaca 7435196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 432 - 571
Target Start/End: Complemental strand, 35721844 - 35721705
Alignment:
Q  432 ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt 531  Q
    |||||||||||||||||||| |  ||||| |||||| | ||||| |  | ||| |||||| ||||||| || |  ||||| |||    |||| |||||||    
T  35721844 ccaccaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaagtgacgaggttgagacttgttgtaattgttgt 35721745  T
Q  532 agtaacaaaactttgtgtttgatgagtcacaacgtggaca 571  Q
    ||||||||||||||||||||| ||| ||||| | ||||||    
T  35721744 agtaacaaaactttgtgtttgttgaatcacatcttggaca 35721705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 23663697 - 23663651
Alignment:
Q  435 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacg 481  Q
    |||||||| |||||||||||||| | ||| |||||||||||||||||    
T  23663697 ccaccaactggaacatttctaagtgcaccccctcttgtccaataacg 23663651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 417 - 571
Target Start/End: Original strand, 8132015 - 8132169
Alignment:
Q  417 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 516  Q
    ||||| |||||  ||||||| ||||||||||| |||| ||| | ||||||| | |||||||||||    |||| ||| || ||||| | ||||||||| |    
T  8132015 ttgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaa 8132114  T
Q  517 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggaca 571  Q
     | |||||||||||||||| || ||||||||||||| ||| ||||| | ||||||    
T  8132115 gattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 8132169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 416 - 550
Target Start/End: Complemental strand, 34646132 - 34645998
Alignment:
Q  416 gttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgac 515  Q
    ||||||| ||||  ||||||||||||||||||  |||||||  |  ||||||   |||||||| | | | || | ||| ||||||| ||||||||||| |    
T  34646132 gttgttttttcttgaaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtc 34646033  T
Q  516 aaactgtagttgttgtagtaacaaaactttgtgtt 550  Q
    ||||| |||||||||||||||||||| ||||||||    
T  34646032 aaactatagttgttgtagtaacaaaattttgtgtt 34645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 24878995 - 24878860
Alignment:
Q  418 tgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaa 517  Q
    ||||| ||||| | ||||||||||||||||||||||| || |  |||||| |||||||||| | | ||||  |||| || |||| ||||||||| |  ||    
T  24878995 tgttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaa 24878896  T
Q  518 actgtagttgttgtagtaacaaaactttgtgtttga 553  Q
     |||||||| |||||||| || || |||||||||||    
T  24878895 gctgtagttattgtagtagcagaattttgtgtttga 24878860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 432 - 556
Target Start/End: Original strand, 41086156 - 41086280
Alignment:
Q  432 ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt 531  Q
    |||||||||||||||||||| | |||||  |||||| | |||||||||||| | ||| |||| || ||||  | ||| || ||||| ||||| |||||||    
T  41086156 ccaccaccaacaggaacattccgaagagagccacctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgt 41086255  T
Q  532 agtaacaaaactttgtgtttgatga 556  Q
    ||||||| || || |||||||||||    
T  41086256 agtaacagaatttggtgtttgatga 41086280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 462 - 574
Target Start/End: Complemental strand, 13481125 - 13481013
Alignment:
Q  462 ccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcac 561  Q
    |||||| |||||||||| | | | || | ||| |||||||||||||||||||  || || |||||||||||||| || || |||||||| | ||||||||    
T  13481125 ccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtcac 13481026  T
Q  562 aacgtggacactt 574  Q
    | | |||||||||    
T  13481025 atcttggacactt 13481013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 469 - 552
Target Start/End: Complemental strand, 28437412 - 28437329
Alignment:
Q  469 ttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttgtgtttg 552  Q
    |||||||||| | | |||| | ||| ||||||||||||||||| |  | ||||||||||||||||||||| || ||||||||||    
T  28437412 ttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttg 28437329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 33740199 - 33740250
Alignment:
Q  520 tgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggaca 571  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||||||||||||    
T  33740199 tgtagttgttgtagtaacaaaacttagtgttggttgaatcacaacgtggaca 33740250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 33823861 - 33823811
Alignment:
Q  522 tagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacac 572  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  33823861 tagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 33823811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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