View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_10 (Length: 374)
Name: NF15543_low_10
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 33607644 - 33607990
Alignment:
| Q |
1 |
cgtaaagactcatttttcgagtcggataagacaccaactatgacaaagttctttctcaaaaatgttaacattgttacattactatcagagttgttaagtt |
100 |
Q |
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| T |
33607644 |
cgtaaagactcattttttgagtcgaataagacaccaactatgacaaagttctttctcaaaaatgttaacattgttacattactatcagagttgttaagtt |
33607743 |
T |
|
| Q |
101 |
gaaaaatactcaaatcatctgaatcacacattgttaaagaattacttcttccgaatttaccaacgcagacacacaaaatattgtactaaagttttatgtt |
200 |
Q |
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| T |
33607744 |
gaaaaatactcaaatcatctgaatcgcacattgttaaacaattacttcttccgagtttaccaacgcagacacacaaaatattgtactaaagttttatgtt |
33607843 |
T |
|
| Q |
201 |
tttctcttttctcaaagtgaaataaatgtaacaatcttaaaaaggtaaaatcttaaactcaagagagaaagagtgaatgcaaacttttgcaagtaaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33607844 |
tttctcttttctcaaagtgaaataaatgtaacaatcttaaaaaggtaaaatcttaaactcaagagagaaagagtgaatgcaaacttttgcaagtaaaaat |
33607943 |
T |
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| Q |
301 |
tgaatagatataggtttgaaaatcaattgtgatagagagagcctggt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33607944 |
tgaatagatataggtttgaaaatcaattgtgatagagagagcctggt |
33607990 |
T |
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