View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_14 (Length: 304)
Name: NF15543_low_14
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 35047765 - 35048040
Alignment:
| Q |
14 |
aatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaaca |
113 |
Q |
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| T |
35047765 |
aatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaaca |
35047864 |
T |
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| Q |
114 |
accgtgaaatcctcaacaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttca |
213 |
Q |
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| T |
35047865 |
accgtgaaatcctcagcaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttca |
35047964 |
T |
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| Q |
214 |
agctattatcaaggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgt |
289 |
Q |
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| T |
35047965 |
agctattatcaaggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgt |
35048040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 35026203 - 35026403
Alignment:
| Q |
37 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
136 |
Q |
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| T |
35026203 |
tttgcaggcactaattctagcagctacagacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaagtc |
35026302 |
T |
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| Q |
137 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
236 |
Q |
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| T |
35026303 |
attcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacattgc |
35026402 |
T |
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| Q |
237 |
g |
237 |
Q |
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| T |
35026403 |
g |
35026403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 35032149 - 35032401
Alignment:
| Q |
37 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
136 |
Q |
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| T |
35032149 |
tttgcaggcattaattctagcggctacagatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaagcc |
35032248 |
T |
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| Q |
137 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
236 |
Q |
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| T |
35032249 |
attcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacattgc |
35032348 |
T |
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| Q |
237 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgt |
289 |
Q |
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| T |
35032349 |
gtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgt |
35032401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 35040166 - 35040418
Alignment:
| Q |
37 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
136 |
Q |
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||||||| || |||||||||| || ||||||||||| || | ||||| || ||| || | | ||||||||| ||||| | |||| | | ||||| ||| |
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| T |
35040166 |
tttgcaggcactaattctagcaggtacagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaagcc |
35040265 |
T |
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| Q |
137 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcaga-tttgcacaagttagagtatcttcaagctattatcaaggaaacaatg |
235 |
Q |
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| T |
35040266 |
attcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattg |
35040364 |
T |
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| Q |
236 |
cgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgt |
289 |
Q |
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|| ||| ||| ||| ||||| |||||||||||||||||| |||||||||| |
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| T |
35040365 |
cgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgt |
35040418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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