View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_16 (Length: 243)
Name: NF15543_low_16
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 35205951 - 35205729
Alignment:
| Q |
17 |
aaacctattgttacagttctcagaaaaggatttagtttagaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaa |
116 |
Q |
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| T |
35205951 |
aaacctattgttacagttctcagaaaaggatttagtttagaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaa |
35205852 |
T |
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| Q |
117 |
aattaataggcgaaaattcagaggcagtttctggtttagttgaattgataaagaaaggaacaattcgaggaaaaaagaacgcggtgcttgcaattttcgg |
216 |
Q |
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| T |
35205851 |
aattaataggcgaaaattcagaggcagtttctggtttagttgaattgataaagaaaggaacaattcgaggaaaaaagaacgcggtgcttgcaattttcgg |
35205752 |
T |
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| Q |
217 |
gttgttattgcttcataagaatc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
35205751 |
gttgttattgcttcataagaatc |
35205729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 43985605 - 43985528
Alignment:
| Q |
56 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
133 |
Q |
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|||||||||| | ||||||| | ||||||||| || || |||||||||||| || |||||||||||||| |||||| |
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| T |
43985605 |
gaagcccgtcaaattgcagcagctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
43985528 |
T |
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