View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_17 (Length: 239)
Name: NF15543_low_17
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_17 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14786030 - 14786247
Alignment:
| Q |
1 |
tccatttctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagc |
100 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14786030 |
tccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagc |
14786129 |
T |
|
| Q |
101 |
tagcaagaccaggaatatcaccatctgctcctctagctgatcctccatagatgggtttcccccaaccataatcaaccttctcaaacccgccgcgtgtcac |
200 |
Q |
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| T |
14786130 |
tagcaagaccaggaatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaaccttctcaaacccgccgcgtgtcac |
14786229 |
T |
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| Q |
201 |
gtcagaaacaagatagga |
218 |
Q |
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|||||||||||||||||| |
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| T |
14786230 |
gtcagaaacaagatagga |
14786247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 14766953 - 14767095
Alignment:
| Q |
7 |
tctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaa |
106 |
Q |
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||||||| ||| |||||||| | ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14766953 |
tctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaa |
14767052 |
T |
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| Q |
107 |
gaccaggaatatcaccatctgctcctctagctgatcctccata |
149 |
Q |
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| T |
14767053 |
caccaggtatagcaccaactcctcctttagctggtccaccata |
14767095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 14877891 - 14878060
Alignment:
| Q |
7 |
tctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaa |
106 |
Q |
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||||||| |||||||||||||| ||| |||| ||| ||| ||||||||||||||||| |||||||||| ||||| | || || ||||||||| ||| |
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| T |
14877891 |
tctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctcctttatcatttgtaaatggaatatgaaagacagctt |
14877990 |
T |
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| Q |
107 |
gaccaggaatatcaccatctgctcctctagctgatcctccatagatgggtttcccccaaccataatcaac |
176 |
Q |
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| T |
14877991 |
gaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaac |
14878060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 14759849 - 14759688
Alignment:
| Q |
7 |
tctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaa |
106 |
Q |
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||||||| |||||||||||||| ||| || || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
14759849 |
tctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacagctt |
14759750 |
T |
|
| Q |
107 |
gaccaggaatatcaccatctgctcctctagctgatcctccatagatgggtttcccccaacca |
168 |
Q |
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||||||||||| || |||| ||||| |||| ||||||||||| | ||||||||||||| |
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| T |
14759749 |
gaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaacca |
14759688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 14873160 - 14873247
Alignment:
| Q |
7 |
tctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatat |
94 |
Q |
| |
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||||||| |||||||||||| | | | |||| ||| ||| |||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
14873160 |
tctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaatggtatat |
14873247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 83951 - 84120
Alignment:
| Q |
7 |
tctttaaaaaacctctccatgacctgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaa |
106 |
Q |
| |
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||||||| |||||||| ||||| ||| |||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||||| || | ||| || |
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| T |
83951 |
tctttaaccaacctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaa |
84050 |
T |
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| Q |
107 |
gaccaggaatatcaccatctgctcctctagctgatcctccatagatgggtttcccccaaccataatcaac |
176 |
Q |
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||||||| || ||||||| || |||||||| |||||||||| | | ||||||||||||| ||||||| |
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| T |
84051 |
taccaggattagtaccatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaac |
84120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 11999596 - 11999704
Alignment:
| Q |
60 |
accttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccaggaatatcaccatctgctcctctagctgatcctccatagatgggtttc |
159 |
Q |
| |
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|||||||||||||||| ||||||| |||| |||| |||||| ||||||||| ||| || |||| ||| ||||| |||||| ||||||||| | |||||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
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| Q |
160 |
ccccaacca |
168 |
Q |
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||||||||| |
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| T |
11999696 |
ccccaacca |
11999704 |
T |
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