View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15543_low_18 (Length: 236)

Name: NF15543_low_18
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15543_low_18
NF15543_low_18
[»] chr6 (12 HSPs)
chr6 (23-186)||(1842835-1842998)
chr6 (117-186)||(1846363-1846432)
chr6 (117-186)||(1848185-1848254)
chr6 (119-186)||(1827650-1827717)
chr6 (120-179)||(1824568-1824627)
chr6 (101-186)||(1845156-1845242)
chr6 (117-181)||(1819757-1819822)
chr6 (129-186)||(1847377-1847434)
chr6 (118-172)||(1836388-1836442)
chr6 (119-170)||(1828558-1828609)
chr6 (118-186)||(1832999-1833067)
chr6 (117-173)||(1839789-1839845)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 1842998 - 1842835
Alignment:
Q  23 catttagaagaagaaaacattgtagttaattgacatccccattttaaaagcattgcatcttggatattggttacagaaatgtgcaatccactggctattt 122  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  1842998 catttagaaaaagaaaacattgtagttaattgatatccccattttaaaagcattgcattttggatattggttacggaaatgtgcaatccactgcctattt 1842899  T
Q  123 atagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842898 atagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 1842835  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 1846432 - 1846363
Alignment:
Q  117 ctatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    ||||||||| | ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  1846432 ctatttataacaaaggtttcctctcaatgctttataagctgccagtgtgggacttattactatctctcta 1846363  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 1848254 - 1848185
Alignment:
Q  117 ctatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    |||||||||  |||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||    
T  1848254 ctatttataagtaaggtttcctctcaatgctttataagacgccaatgtgggacttattactatctctcta 1848185  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 1827717 - 1827650
Alignment:
Q  119 atttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    ||||||||||||| || |||| ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  1827717 atttatagctaagattccctctcaatgctatataagccgtcgatgtgggacttattactatctctcta 1827650  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 1824627 - 1824568
Alignment:
Q  120 tttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactat 179  Q
    |||||| | |||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  1824627 tttatatcaaaggtttcatctcaatgctatataagctgccgatgtgggacttattactat 1824568  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 1845242 - 1845156
Alignment:
Q  101 atgtgcaatccactggctatttatagctaaggtttcctcccaatgctttat-aagctgccgatgtgggacttattactatctctcta 186  Q
    ||||||| ||||||  |||||||||| ||||||||||||||||||| |||| || |||| |||||||| |||||||| |||| ||||    
T  1845242 atgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttcta 1845156  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 1819822 - 1819757
Alignment:
Q  117 ctatttatagctaaggtttcctcccaa-tgctttataagctgccgatgtgggacttattactatct 181  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||| | |||||| ||||    
T  1819822 ctatttatagctaaggtttcctctcaaatgctatataagctgccgatgtgggtcatattacaatct 1819757  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 1847434 - 1847377
Alignment:
Q  129 aaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||| |||| ||||    
T  1847434 aaggtttcctcccaatgcattataagctgccgttgtgggtcttattacaatctttcta 1847377  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 1836442 - 1836388
Alignment:
Q  118 tatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggactta 172  Q
    |||||||| ||||||| |||||  ||||||||||||||| |||||||||||||||    
T  1836442 tatttataactaaggtgtcctctaaatgctttataagcttccgatgtgggactta 1836388  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 1828609 - 1828558
Alignment:
Q  119 atttatagctaaggtttcctcccaatgctttataagctgccgatgtgggact 170  Q
    ||||||| || |||||||||| ||||||||||||| ||| ||||||||||||    
T  1828609 atttataacttaggtttcctctcaatgctttataaactgtcgatgtgggact 1828558  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 1833067 - 1832999
Alignment:
Q  118 tatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttattactatctctcta 186  Q
    |||||||||||| ||| ||||| | |||||||||| | || |||||||||||||| || | ||||||||    
T  1833067 tatttatagctatggtgtcctctcgatgctttatatgttgtcgatgtgggacttaatattgtctctcta 1832999  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 1839845 - 1839789
Alignment:
Q  117 ctatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggacttat 173  Q
    ||||||| ||||||||||||||| ||||||  || |||||| || ||||||||||||    
T  1839845 ctatttaaagctaaggtttcctctcaatgccatacaagctgtcgttgtgggacttat 1839789  T

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