View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_2 (Length: 633)
Name: NF15543_low_2
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 627
Target Start/End: Original strand, 42742114 - 42742714
Alignment:
| Q |
16 |
atgaaccagtgtatcactttgaatttgggtaaaccttcttatataactaacaaacttgcgccaatgcttggcaatggcattttgagagccaatggccaaa |
115 |
Q |
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| T |
42742114 |
atgaaccagtgtattactttgaatttgggtaaaccttcttatataactaacaaacttgcgccaatgcttggcaatggcattttgagagccaatggccata |
42742213 |
T |
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| Q |
116 |
gttgggcacaacagaggaaacttgttgcagctgagttcttcatggacaaagttaaggtattatgatctctcctcattgtctcacccttgtttacatattg |
215 |
Q |
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| T |
42742214 |
gttgggcacaacagaggaaacttgttgcagctgagttcttcatggacaaagttaaggtattatgatctctcctcattgtctcacccttgtttacatattg |
42742313 |
T |
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| Q |
216 |
ttgtatttttggaatgattaatattctcaacaataatagatttttatgcaatctttgtgttatttgacttttttcaaaaacaaattcttttatacacaaa |
315 |
Q |
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| T |
42742314 |
ttgtatttttggaatgattaatattctcaactataagagatttttatgcaatcttcgtgttatttgacttttttcaaaaacaaattcttttatacacaaa |
42742413 |
T |
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| Q |
316 |
gaacctgcatgtactataatgaacccacacactcttgacaatacctttacaaaaattacaattaaataagtttaggcacacaattaacattataattaat |
415 |
Q |
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| T |
42742414 |
gaacctgcatgtact---atgaacccacacactcttgacaatacctttacaaaaattacaattaaataagttcaggcacacaattaacattataattaat |
42742510 |
T |
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| Q |
416 |
tttaaattcttaatccattttctatatatgacttatttatctaagatacattataaagataagtacatttataataatgtattaatgtgtcattagtgtc |
515 |
Q |
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| T |
42742511 |
tttaaattcttaatccattttctatatatcacttatttatctaagatacattataaagataagtacatttataa--------taatgtgtcattagtgtc |
42742602 |
T |
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| Q |
516 |
caagaggtgtcaactcagcggtttaacgttgtaacctcaagacacataagacaccggtaaaatggtcattagtgtttattaataacaatttttccttccc |
615 |
Q |
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| T |
42742603 |
caagaggtgtcaactcagcggtttaacgttgtaacctcaagacacataagacactggtaaaatggtcattagtgtttattaataacaatttttccttccc |
42742702 |
T |
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| Q |
616 |
cattttattttt |
627 |
Q |
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| T |
42742703 |
cattttattttt |
42742714 |
T |
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