View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_20 (Length: 210)
Name: NF15543_low_20
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 4276101 - 4276284
Alignment:
| Q |
12 |
ccaagaatatatgcgtgcttcaaaagcatgtttcacagcgtttcagctgacattatgatatgaatcgataatagcatctgcaaggtattcacatttggcc |
111 |
Q |
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|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4276101 |
ccaaaaatatatgcttgcttcaaaagcatgtttcacagtgtttcagctgacattatgatatgaatcgataataacatctgcaaggtattcacatttggcc |
4276200 |
T |
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| Q |
112 |
agtgactctc-taacagtttttatccttccagccatcatatccatttctgctttccattcatcaaagagagctggagtcccaac |
194 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276201 |
agtgactctcttaacagtttttatccttccagccatcatttccatttctgctttccattcatcaaagagagctggagtcccaac |
4276284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 2811101 - 2811206
Alignment:
| Q |
12 |
ccaagaatatatgcgtgcttcaaaagcatgtttcacagcgtttcagctgacattatgatatgaatcgataatagcatctgcaaggtattcacatttggcc |
111 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2811101 |
ccaaaaatatatgcttgcttcaaaagcatgtttcacagcgtttcagctgacattatgatatgaatcgataatagcatctgcaaggtattcacatttggcc |
2811200 |
T |
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| Q |
112 |
agtgac |
117 |
Q |
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|||||| |
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| T |
2811201 |
agtgac |
2811206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 2811534 - 2811608
Alignment:
| Q |
120 |
tctaacagtttttatccttccagccatcatatccatttctgctttccattcatcaaagagagctggagtcccaac |
194 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2811534 |
tctaacagtttttatccttccagccatcatttccatttctgctttccattcatcaaagagagctggagtcccaac |
2811608 |
T |
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