View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15543_low_3 (Length: 530)
Name: NF15543_low_3
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Original strand, 35047176 - 35047662
Alignment:
| Q |
13 |
aatatcatgtgagatttatcatctatttttactctaatagatcctttcnnnnnnnnnnnnnnnactctaatagatgataaatctggattttcaaaaaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047176 |
aatatcatgtgagatttatcatctatttttactctaatagatcctttcaaaaaaaaaaaatttattctaatagatgataaatctggattttcaaaaaact |
35047275 |
T |
|
| Q |
113 |
caagctttgtcgttaacgtattttcaaatctggattttctttccctttcttcctacttttttgtgacgtatagctgctggaacatgttttccttgaggaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047276 |
caagctttgtcgttaacgtattttcaaatctggattttctttccctttcttcctacttttttgggacgtatagctgctggaacatgttttccttgaggaa |
35047375 |
T |
|
| Q |
213 |
cagttctccgacctgactttcacatcacccaacttcaatggacaatgaaactagatcatgttcttgaacttgtagaacattgtggaatacaatggagatg |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047376 |
cagttctccgacctgactttcacatcatccaacttcaatggacaatgaaactagatcatgttcttgaacttgtagaacattgtggaatacaatggagatg |
35047475 |
T |
|
| Q |
313 |
ccctaatcataaattaaaaaagtataagtattattagcatagagttgattttcacaaggttggctttgagaatttagatatttttgttgatcgatttgat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047476 |
ccctaatcataaattaaaaaagtataagtattattagcatagagttgattttcacaaggttgtctttgagaatttagatatttttgttgatcgatttgat |
35047575 |
T |
|
| Q |
413 |
tcattctttgcgcccaaatatttgaattgtgatcttttattggacacaagaagacgaagacttgaatcatagtttgcatcatttgtc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047576 |
tcattctttgcgcccaaatatttgaattgtgatcttttattggacacaagaagacgaagacttgaatcatagtttgcatcatttgtc |
35047662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University