View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_4 (Length: 510)
Name: NF15543_low_4
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 222 - 495
Target Start/End: Original strand, 41930398 - 41930671
Alignment:
| Q |
222 |
gtggtggtgagaggaaaaattgttcaaagagatggatattagaataaagaattcaataaaatgacccacttctgtgaataataagaatattcttaatagt |
321 |
Q |
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| T |
41930398 |
gtggtggtgagaggaaaaattgttcaaagagatggatattagaataaggaattcaataaaaagacccacttcagtgactaataagaactttcttaaaagt |
41930497 |
T |
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| Q |
322 |
atagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaaggacaaaaacttacctgtgtac |
421 |
Q |
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| T |
41930498 |
atagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaacgacaaaaacttacctgtgtac |
41930597 |
T |
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| Q |
422 |
actctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaattt |
495 |
Q |
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| T |
41930598 |
actctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaattt |
41930671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 52858423 - 52858609
Alignment:
| Q |
24 |
ccattgactttgactttgtcttaataaaaacaaacatataccgtta------------ttgttattgttattgtggttgagagtggctagatggttgaga |
111 |
Q |
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| T |
52858423 |
ccattgactttgactttgtcttaataaaaacaaacatataccgttattgttattgttattgttattgttattgtggttgagagtggctagatggttgaga |
52858522 |
T |
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| Q |
112 |
aagccgactggagagcttttctgacggagcaaagcggatccatcaaagccaccaccttgaccttcgtaagaagatctctgctgctgc |
198 |
Q |
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| T |
52858523 |
aagccggctggagagcttttctgacggagcaaagcggatccatcaaagccaccaccttgaccttcgtaagaagatctctgctgctgc |
52858609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 2203499 - 2203450
Alignment:
| Q |
418 |
gtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
467 |
Q |
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| T |
2203499 |
gtacactctatcaagtacacggggtaccgcacagaaaatagttggtttta |
2203450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 2216116 - 2216060
Alignment:
| Q |
411 |
tacctgtgtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
467 |
Q |
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| T |
2216116 |
tacctgagtacactctatcaagtacacgaggtaccgcacagaaaaaagttggtttta |
2216060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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