View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_5 (Length: 484)
Name: NF15543_low_5
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Original strand, 11640936 - 11641378
Alignment:
| Q |
12 |
aagaaaaggggtgaaatggacattttctggtcagatgcttgatgcaatcaaatgtgaatttattatatatatgttagtgtgtatttatcataatatacac |
111 |
Q |
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| T |
11640936 |
aagaaaaggggtgaaatggacattttctggtcagatgcttgatgcaatcaaatgtgaattgattatatatatgttagtgtgtatttatcataatatacac |
11641035 |
T |
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| Q |
112 |
acataatataaagaataaaagacataagtgtctcatttcaaataaaaacacaaactctcgataaaaaggtcatgaaaaagttctaccattagggttttca |
211 |
Q |
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| T |
11641036 |
acataatataaagaaaaaaagacataagtgtctcatttcaaataaaaacacaaactctcgataaaaaggtcatgaaaaagtt-taccattagggttttca |
11641134 |
T |
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| Q |
212 |
ttctccacatcaatatcatggaaaatatttgatagagactcgtacacccaacttccaatttnnnnnnngagagaaaaataaaggtggtgtgatatatgta |
311 |
Q |
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| T |
11641135 |
ttctccacatcaatatcatggaaaatatttgatag------gtacacccaacttccaattt-aaaaaagagagaaaaagaaagttggtgtgatatatgta |
11641227 |
T |
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| Q |
312 |
gtatattagtgatgtgatgtgataagagatagaaagaaaatgagatgttgaacggtgtatgaaaattaagagtgtcaaatgtatcattcttgtaatatca |
411 |
Q |
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| T |
11641228 |
gtatattagtgatgtgatgtgataagagatagaatgaaaatgagatgttgaacggtgtatgaaaattaagagtgtcaaatgtatcattgttgtaatatca |
11641327 |
T |
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| Q |
412 |
tgaatatgtcaat--agtgtcggtttagtgatatgaaattgctttgttatg |
460 |
Q |
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| T |
11641328 |
tgaatatgtcaataaagtgtcggtttagtgatatgaaattgctttcttatg |
11641378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 11645441 - 11645514
Alignment:
| Q |
20 |
gggtgaaatggacattttctggtcagatgcttgatgcaatcaaatgtgaatttattatatatatgttagtgtgt |
93 |
Q |
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| T |
11645441 |
gggtgaaatggacattttttggggagatgcttgatgcaattaaaggagaatttattatatctatgtttgtgtgt |
11645514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 11622378 - 11622440
Alignment:
| Q |
17 |
aaggggtgaaatggacattttctggtcagatgcttgatgcaatcaaatgtgaatttattatat |
79 |
Q |
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| T |
11622378 |
aaggggtgaaatgagcattttctggtcagatgcttgatgcaaataaatgagaattaattatat |
11622440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 11622465 - 11622540
Alignment:
| Q |
122 |
aagaataaaagacataagtgtctcatttcaaataaaaacacaaactctcgataaaaaggtcatgaaaaagttctac |
197 |
Q |
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| T |
11622465 |
aagaataaacgacaaaaatttctcatttaaaataaaggcacaaattctgcataaaaatgtcatgaaaaagttctac |
11622540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 11655026 - 11655066
Alignment:
| Q |
19 |
ggggtgaaatggacattttctggtcagatgcttgatgcaat |
59 |
Q |
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| T |
11655026 |
ggggtgaaatggaagttttctggtcagatacttgatgcaat |
11655066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 34078720 - 34078750
Alignment:
| Q |
335 |
aagagatagaaagaaaatgagatgttgaacg |
365 |
Q |
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| T |
34078720 |
aagagatagaaagaaaatgagatgttgaacg |
34078750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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