View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_8 (Length: 382)
Name: NF15543_low_8
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 31 - 364
Target Start/End: Original strand, 47831893 - 47832225
Alignment:
| Q |
31 |
tggtaaggggacctagtgatattcatgtttggtaaatattgactgagtttgaaattgtgtctagtaattctataactacaccattgtcaacacattacaa |
130 |
Q |
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| T |
47831893 |
tggtaaggggacctagtgatattcatgcttggtaaatattgattgagtttggaattgtgtctagtaattctataactacgccattgtcaacacattacaa |
47831992 |
T |
|
| Q |
131 |
agttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccg |
230 |
Q |
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| T |
47831993 |
agttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccg |
47832092 |
T |
|
| Q |
231 |
acccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagtta |
330 |
Q |
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| T |
47832093 |
acccttcggggagcacatttggccttagagggc-taaaccacctttcccggcttctagaaacttctagaacgcctgcctgctatcttggggcctaagtta |
47832191 |
T |
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| Q |
331 |
cttaggggcagacacgaagatataagttcaaata |
364 |
Q |
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| T |
47832192 |
cttaggggcagacacgaagatataagttcaaata |
47832225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 74 - 276
Target Start/End: Complemental strand, 2539389 - 2539186
Alignment:
| Q |
74 |
tgagtttgaaattgtgtctagtaattctataactacac-cattgtcaacacattacaaagttggggtaagttttcattcaaccccaatcaacctttttat |
172 |
Q |
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| T |
2539389 |
tgagtttgaaactgtgtctagtagttctataactaccctcattgtcaacacattacaaagttggggtgagttttcattcaaccccaatcaacccttttat |
2539290 |
T |
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| Q |
173 |
aggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccac |
272 |
Q |
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| T |
2539289 |
aaatatggatcaccaatattatattaagggcttgtcgtccctcaataaaggctttcgggcccttcgaggagcgcctttggccgtagaaggcgtaaaccac |
2539190 |
T |
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| Q |
273 |
cttt |
276 |
Q |
| |
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|||| |
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| T |
2539189 |
cttt |
2539186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 337
Target Start/End: Original strand, 47827322 - 47827504
Alignment:
| Q |
154 |
ccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggc |
253 |
Q |
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| T |
47827322 |
ccccaatcgacccttttataaacatggaccgtcgatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcgggg-gcgcctttggc |
47827420 |
T |
|
| Q |
254 |
cttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggg |
337 |
Q |
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| T |
47827421 |
cttagaaggcgaaaacttcctttcccagcttttagaaacttctagaacgctcgcctgctattttggagccgaagtcaattaggg |
47827504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 47834304 - 47834383
Alignment:
| Q |
211 |
ccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaa |
290 |
Q |
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|||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||||| |
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| T |
47834304 |
ccctcaataatggcttgtcgacccttcggggcgcacgcttggccttagaaggcgtaaaccgccttttccagcttctagaa |
47834383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 2537682 - 2537631
Alignment:
| Q |
286 |
tagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggg |
337 |
Q |
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||||||||||||||||||| | |||||||||||||||||| |||| ||||| |
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| T |
2537682 |
tagaaacttctagaacgctcgcttgctatcttggggcctaacttacataggg |
2537631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 47827222 - 47827255
Alignment:
| Q |
31 |
tggtaaggggacctagtgatattcatgtttggta |
64 |
Q |
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| T |
47827222 |
tggtaaggggacctagtgatattcatgcttggta |
47827255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 327
Target Start/End: Original strand, 16778538 - 16778742
Alignment:
| Q |
121 |
cacattacaaagttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataa |
220 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| | ||||| |
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| T |
16778538 |
cacattaaaaagttggggtgagttttcattcaaccccaatcaacctttttataggcatggaccaccaatattatatta--gatttgtcgtccttaaataa |
16778635 |
T |
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| Q |
221 |
aggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggg |
320 |
Q |
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||||||| |||||||||||||||| | |||||||||| |||| ||||||||||||| || |||||||||||||||||||| || || ||||||||| || |
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| T |
16778636 |
aggcttgtcgacccttcggggagcgcctttggccttataaggtgtaaaccacctttcccagcttctagaaacttctagaatgcctgcctgctatctctgg |
16778735 |
T |
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| Q |
321 |
gcctaag |
327 |
Q |
| |
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||||||| |
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| T |
16778736 |
gcctaag |
16778742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 4330065 - 4330225
Alignment:
| Q |
177 |
atggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccaccttt |
276 |
Q |
| |
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||||||| |||||| ||||||||||||||| | ||||||||||||||||||| |||||||| |||| | | ||||| |||||||| ||||| | ||||| |
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| T |
4330065 |
atggacctccaataatatattaagggcttgccatccctcaataaaggcttgctgacccttcagggaccgcctttggtattagaaggtgtaaatcgccttt |
4330164 |
T |
|
| Q |
277 |
accggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggg |
337 |
Q |
| |
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|| | ||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
4330165 |
cccagattctagaaacttctagaacgcgcacctgctgtcttggggtctaagttacttaggg |
4330225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 16778435 - 16778476
Alignment:
| Q |
31 |
tggtaaggggacctagtgatattcatgtttggtaaatattga |
72 |
Q |
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| T |
16778435 |
tggtaaggggacttagtgatattcatgcttggtaaatattga |
16778476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 31253216 - 31253263
Alignment:
| Q |
178 |
tggaccgccaatattatattaagggcttgtcgtccctcaataaaggct |
225 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
31253216 |
tggaccaccaatattatattaagggcttgttagccctcaataaaggct |
31253263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 3230001 - 3230055
Alignment:
| Q |
178 |
tggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgac |
232 |
Q |
| |
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||||||||| |||||||||||| |||||| |||||||||||||||||||||| |
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| T |
3230001 |
tggaccgccgatattatattaaaggcttgcgagccctcaataaaggcttgccgac |
3230055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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