View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15543_low_9 (Length: 377)
Name: NF15543_low_9
Description: NF15543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15543_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 2826927 - 2827283
Alignment:
| Q |
1 |
tcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagtggctt |
100 |
Q |
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| T |
2826927 |
tcatgccatttttattttttgcagtcattccta------gccggtttagccgcctcaggagttctaacatcttgtttgagatttctcaccaaagtggttt |
2827020 |
T |
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| Q |
101 |
ttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgcactagcgaacatataaatcaaaataagttttactcacaaaaatttat |
200 |
Q |
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||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
2827021 |
ttgagaaatcggaggacggacttcgaagaggggcatgtatgctacccttttgcacttgcgaacatataaatcaaaatcagttttagtcacaaaaacatat |
2827120 |
T |
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| Q |
201 |
tttccattctaaaagttatat-ctgcatatatgatagacttaatagttagtatttaccaataannnnnnnnnngcagtgctattctttggaatctctatc |
299 |
Q |
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||||||||||||||||| ||| ||| |||||| |||||||||| |||| || ||||| |||||||||||||||||||| |||| | |
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| T |
2827121 |
tttccattctaaaagttctatgctgaatatatcatagacttaa-------tattcactaataattttttttttgcagtgctattctttggaatatctacc |
2827213 |
T |
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| Q |
300 |
ctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattatc |
369 |
Q |
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| T |
2827214 |
ttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccattgtaaaatattatc |
2827283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2823527 - 2823674
Alignment:
| Q |
1 |
tcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagtggctt |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2823527 |
tcatgccatttttattttctgcagtcattc------ctagctggtttagtcgcctcaggagttctaacgtcttgtttgagatttctcaccaaagtggctt |
2823620 |
T |
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| Q |
101 |
ttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgca |
154 |
Q |
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| T |
2823621 |
ttgaggaatcggatgacggacttcgaaaagaggcatgtatgttacccttttgca |
2823674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 2820017 - 2820112
Alignment:
| Q |
273 |
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
368 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2820017 |
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
2820112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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