View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15544_high_1 (Length: 666)
Name: NF15544_high_1
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 7389172 - 7389557
Alignment:
| Q |
1 |
aaacactccaaatgggaggtttagttgggttgtaaactaatggatcattatcaggtccatttaattctcggttcccatcaaactaataaaaagatcaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7389172 |
aaacactccaaatgggaggtttagttgggttgtaaactaatggatcattatcaggtccatttaattcttggttcccatcaaactaacaaaaagatcaagc |
7389271 |
T |
|
| Q |
101 |
cacctaagcagacagtgtaaactagaaatgaaatattacatcaaacatggctatcttaagtcaaaaagattgatagactcaaattttggtatcagggaat |
200 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7389272 |
cacctatgcagacagtgtaaactaggaatgaaatattacatcaaacatggctatcttaagtcaaaaagattgatagactcaaattttggtatcagggaat |
7389371 |
T |
|
| Q |
201 |
acatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggttaagattgattgaatacattttcaacaagaatcagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7389372 |
acatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggttaagattgattgaatacattttcaacaagaatcagct |
7389471 |
T |
|
| Q |
301 |
aaataaaaaatccctttataacaaacaagtaaatcatgaaagcatcaaatagccacactttccagtagtgggaacagaacacgtta |
386 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7389472 |
aaataaaaaatccctttatagcaaacaagtaaatcatgaaagcatcaaatatccacactttccagtagtaggaacagaacacgtta |
7389557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 475 - 638
Target Start/End: Original strand, 7389595 - 7389756
Alignment:
| Q |
475 |
ggttctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatatactactatagtttccaacccnnnnnnnnnnnnnnnn |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||| |
|
|
| T |
7389595 |
ggttctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatatataatgat--tttcgaacccaaaaaaagaaaaagaa |
7389692 |
T |
|
| Q |
575 |
ntaatagtatgtatttctagtttactatggtttttgtcaaaaagattaatatcattgcttacat |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7389693 |
acaatagtatgtatttctagtttactatggtttttgtcaaaaagattaatatcattgctcacat |
7389756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 1341755 - 1342228
Alignment:
| Q |
1 |
aaacactccaaatgggaggtttagttgggttgt---aaactaatggatcattatcaggtccatttaattctcggttcccatcaaactaataaaaagatca |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
1341755 |
aaacactccaaatgggaggtttagttgggttgttgtaagctaatggaacattatcaggtccatttagttcttggttcccatcagactaataaaaagatca |
1341854 |
T |
|
| Q |
98 |
agccacctaagcagacagtgtaaactagaaatgaaatattacatcaa-----acatggctatcttaagtcaaaaagattgatagactcaaattttggtat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1341855 |
agccacctaagcagacagtgtaaactagaaatgaaatattacattaagtataacatgtctatcttaagtcaaaaagattgatagactcaaactttggtat |
1341954 |
T |
|
| Q |
193 |
cagggaatacatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggtt---aagattgattgaatacattttcaac |
289 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| || ||||| |||||||||| || ||||||||||| |
|
|
| T |
1341955 |
caaggactacatacttctccatcaagtttctcttgccttgaacatagacgtatcacatactttgtttgggttaagaagattgatttaacacattttcaac |
1342054 |
T |
|
| Q |
290 |
aagaatcagctaaataaaaaatccctttataacaaacaagtaaatcatgaaagcatcaaatagccacactttcc----agtagtgggaacagaacacgtt |
385 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||||||||| |
|
|
| T |
1342055 |
aagaatcagctaaat-acaaatccctttatagcaaacaagtaaatcatgacagcatcaaatagccatactttccacagagtgataggaacagaacacgtt |
1342153 |
T |
|
| Q |
386 |
atgttttcaggcaagtttttcatacaacacttcaagagataattcaatatgcatacagttatatataaaggggat |
460 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
1342154 |
ctgttttcaggtaagtttttcatacaacacttcaagtgataagacaaaacgcatacagttatatataaaggggat |
1342228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 40787770 - 40787708
Alignment:
| Q |
476 |
gttctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatata |
539 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
40787770 |
gttctcttttatggaggaactcatg-tttaaatatgcacatggttaggagagaaatctaatata |
40787708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 581 - 639
Target Start/End: Complemental strand, 40787654 - 40787596
Alignment:
| Q |
581 |
gtatgtatttctagtttactatggtttttgtcaaaaagattaatatcattgcttacata |
639 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
40787654 |
gtatgtatttctagtttactgcggcaattgtcaaaaagattaatatcattgctcacata |
40787596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 21143620 - 21143558
Alignment:
| Q |
476 |
gttctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatata |
539 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21143620 |
gttctcttttatggaagaactcatgttt-aaatgtgcacatggttaggagagaaatctaatata |
21143558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 17274764 - 17274824
Alignment:
| Q |
478 |
tctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatata |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| || | ||| |||||||||||| |
|
|
| T |
17274764 |
tctcttttatggaggaactcatg-tttaaatatgcacatgttttgaagaggaatctaatata |
17274824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 17274860 - 17274908
Alignment:
| Q |
577 |
aatagtatgtatttctagtttactatggtttttgtcaaaaagattaata |
625 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
17274860 |
aatagtatgtatttatagtttactgtggcaattgtcaaaaagattaata |
17274908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 15008198 - 15008136
Alignment:
| Q |
476 |
gttctcttttatggaggaactcatgttttaaatgtgcacatgattaggagatgaatctaatata |
539 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15008198 |
gttctcttttatggaggaactgatattt-aaatgtgcacatggttaggagagaaatctaatata |
15008136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 639
Target Start/End: Complemental strand, 15008047 - 15007986
Alignment:
| Q |
578 |
atagtatgtatttctagtttactatggtttttgtcaaaaagattaatatcattgcttacata |
639 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||| |
|
|
| T |
15008047 |
atagtatgtatttctagtttactgcggcaattgtcaaaaagattaatattattgctcacata |
15007986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University